PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G073100.1

Common Name

B456_009G073100, LOC105767532

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 264aa MW: 29810 Da PI: 5.7847

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G073100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.9	9.8e-15	71	123	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N+ ++ Lr+llP a + kKls +++ +A +YI +Lq Gorai.009G073100.1 71 KKLNHNASERDRRKKVNNMYSSLRSLLPVA--DQTKKLSFPATVSHALKYIPELQ 123 6789***********************6..48888*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.948	70	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-16	71	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.65E-13	71	127	No hit	No description
Pfam	PF00010	6.7E-12	71	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.1E-14	71	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-11	76	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MCALAPFPTP NWPLVNPIGY EHNYMMYEGG SECLESFLQF PPPPQEGIPL ESLSPASNFT 60 QTSNSDPCIV KKLNHNASER DRRKKVNNMY SSLRSLLPVA DQTKKLSFPA TVSHALKYIP 120 ELQQQVERLV QKKEELLLRI SEQGGVKPSE ENEEERKRNN RKQGRCLSGV GVSINRLSDG 180 EVAIQISMRE VDKRNALLSE MLQYLEQQGF LLLNVSSFES FGGVVFYNIH LQMELETSRK 240 MGSEEALSEK ILALCYNREE LGL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX588333	2e-65	JX588333.1 Gossypium hirsutum clone NBRI_GE22730 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012442546.1	0.0	PREDICTED: transcription factor ORG2-like isoform X1
TrEMBL	A0A0D2QB21	0.0	A0A0D2QB21_GOSRA; Uncharacterized protein
STRING	Gorai.009G073100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM482	28	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	2e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G073100.1
Entrez Gene	105767532

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]