PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G072000.3

Common Name

B456_009G072000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 724aa MW: 83714 Da PI: 7.2942

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G072000.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.5	9.2e-13	29	88	2	65
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkak 65 +Y++YAk+vGF + k +s++s+ ++e+++++f+C ++g++++++++ ++r++ ++gCka+ Gorai.009G072000.3 29 YYKDYAKSVGFGTAKLSSRRSRVSKEFIDAKFTCIRYGNKQQSDDA----INPRPSPKIGCKAT 88 9*************************************999877....9*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.1E-11	29	90	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-30	197	290	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.781	477	513	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.1E-9	484	511	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	488	515	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence Send to blast
MDSSIGTSDM ILASHRELEF ESHEAAYSYY KDYAKSVGFG TAKLSSRRSR VSKEFIDAKF 60 TCIRYGNKQQ SDDAINPRPS PKIGCKATHF FRSHRNVDPL KTDVGRKRKS LASVSKLFSA 120 YQNIDFLEGY MRNQHDKGRS LVLEEGDAQV LLELLMHMQE ENPKFFYAVD LNEEHRLRNV 180 FWVDAKGMED FSNFGDVVSF DTTYFTNKYK IPLVLFIGVN HHIQPTLLGC ALIADETVYT 240 FLWLMQTWFI AMGERAPQVM LTDQNNAIKA AVAAVFPTTR HCFCLWHVLE KLPRHLEYLS 300 LWHDSLMLKL DKCIYRSWTE DQFEKRWWKM VDKFHLREMQ WVLSLYEDRK RWVPVFMRDI 360 SFAGLSTALR SDSLSSSFDK YVHGETSLRE FIEHYRVILE DRYEEEAKAD FNAWHETPEL 420 KSPSPFEKQI SLVYTHEVFK KFQVEVLGAA ACHLKKENED QVPATYSVKD FEDNQNYMVE 480 WNEAKSDIYC SCRSFEYKGY LCRHAIVVLQ MSGVFNIPSK YILQRWTNAA LSRLPISQKL 540 DEVQSKVRRY NDLCRRAIIL SEEGSLSQES YNLALSAIKE ALKQCASVNN SVENEYRPNT 600 SMIRADSGVE RVSQCVNNQE KAADPRMTNT TKTCQSVETA LERQINENNA TRKGKVSLAG 660 AVNVGSQDGF HQMEMSDMRP THLHNVMPPT QLHNMVPTMF TNVASTHFQN VAATHLHDNR 720 LHR*

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence Send to blast

MDSSIGTSDM ILASHRELEF ESHEAAYSYY KDYAKSVGFG TAKLSSRRSR VSKEFIDAKF  60
TCIRYGNKQQ SDDAINPRPS PKIGCKATHF FRSHRNVDPL KTDVGRKRKS LASVSKLFSA  120
YQNIDFLEGY MRNQHDKGRS LVLEEGDAQV LLELLMHMQE ENPKFFYAVD LNEEHRLRNV  180
FWVDAKGMED FSNFGDVVSF DTTYFTNKYK IPLVLFIGVN HHIQPTLLGC ALIADETVYT  240
FLWLMQTWFI AMGERAPQVM LTDQNNAIKA AVAAVFPTTR HCFCLWHVLE KLPRHLEYLS  300
LWHDSLMLKL DKCIYRSWTE DQFEKRWWKM VDKFHLREMQ WVLSLYEDRK RWVPVFMRDI  360
SFAGLSTALR SDSLSSSFDK YVHGETSLRE FIEHYRVILE DRYEEEAKAD FNAWHETPEL  420
KSPSPFEKQI SLVYTHEVFK KFQVEVLGAA ACHLKKENED QVPATYSVKD FEDNQNYMVE  480
WNEAKSDIYC SCRSFEYKGY LCRHAIVVLQ MSGVFNIPSK YILQRWTNAA LSRLPISQKL  540
DEVQSKVRRY NDLCRRAIIL SEEGSLSQES YNLALSAIKE ALKQCASVNN SVENEYRPNT  600
SMIRADSGVE RVSQCVNNQE KAADPRMTNT TKTCQSVETA LERQINENNA TRKGKVSLAG  660
AVNVGSQDGF HQMEMSDMRP THLHNVMPPT QLHNMVPTMF TNVASTHFQN VAATHLHDNR  720
LHR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445995.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A0D2QAX4	0.0	A0A0D2QAX4_GOSRA; Uncharacterized protein
STRING	Gorai.009G072000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Gorai.009G072000.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]