PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G072000.1

Common Name

B456_009G072000, LOC105769720

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 754aa MW: 87392.2 Da PI: 7.5456

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G072000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.6	3.2e-26	29	114	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y++YAk+vGF + k +s++s+ ++e+++++f+C ++g++++++++ ++r++ ++gCka+++vk+++dgkw+v+++ +eHnHel p Gorai.009G072000.1 29 YYKDYAKSVGFGTAKLSSRRSRVSKEFIDAKFTCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFIKEHNHELLP 114 9*************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-24	29	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-30	226	319	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.781	506	542	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.3E-9	513	540	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	517	544	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MDSSIGTSDM ILASHRELEF ESHEAAYSYY KDYAKSVGFG TAKLSSRRSR VSKEFIDAKF 60 TCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFIKEHNH ELLPAQAHFF 120 RSHRNVDPLK TDVGRKRKSL ASVSKLFSAY QNIDFLEGYM RNQHDKGRSL VLEEGDAQVL 180 LELLMHMQEE NPKFFYAVDL NEEHRLRNVF WVDAKGMEDF SNFGDVVSFD TTYFTNKYKI 240 PLVLFIGVNH HIQPTLLGCA LIADETVYTF LWLMQTWFIA MGERAPQVML TDQNNAIKAA 300 VAAVFPTTRH CFCLWHVLEK LPRHLEYLSL WHDSLMLKLD KCIYRSWTED QFEKRWWKMV 360 DKFHLREMQW VLSLYEDRKR WVPVFMRDIS FAGLSTALRS DSLSSSFDKY VHGETSLREF 420 IEHYRVILED RYEEEAKADF NAWHETPELK SPSPFEKQIS LVYTHEVFKK FQVEVLGAAA 480 CHLKKENEDQ VPATYSVKDF EDNQNYMVEW NEAKSDIYCS CRSFEYKGYL CRHAIVVLQM 540 SGVFNIPSKY ILQRWTNAAL SRLPISQKLD EVQSKVRRYN DLCRRAIILS EEGSLSQESY 600 NLALSAIKEA LKQCASVNNS VENEYRPNTS MIRADSGVER VSQCVNNQEK AADPRMTNTT 660 KTCQSVETAL ERQINENNAT RKGKQVSLAG AVNVGSQDGF HQMEMSDMRP THLHNVMPPT 720 QLHNMVPTMF TNVASTHFQN VAATHLHDNR LHR*

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MDSSIGTSDM ILASHRELEF ESHEAAYSYY KDYAKSVGFG TAKLSSRRSR VSKEFIDAKF  60
TCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFIKEHNH ELLPAQAHFF  120
RSHRNVDPLK TDVGRKRKSL ASVSKLFSAY QNIDFLEGYM RNQHDKGRSL VLEEGDAQVL  180
LELLMHMQEE NPKFFYAVDL NEEHRLRNVF WVDAKGMEDF SNFGDVVSFD TTYFTNKYKI  240
PLVLFIGVNH HIQPTLLGCA LIADETVYTF LWLMQTWFIA MGERAPQVML TDQNNAIKAA  300
VAAVFPTTRH CFCLWHVLEK LPRHLEYLSL WHDSLMLKLD KCIYRSWTED QFEKRWWKMV  360
DKFHLREMQW VLSLYEDRKR WVPVFMRDIS FAGLSTALRS DSLSSSFDKY VHGETSLREF  420
IEHYRVILED RYEEEAKADF NAWHETPELK SPSPFEKQIS LVYTHEVFKK FQVEVLGAAA  480
CHLKKENEDQ VPATYSVKDF EDNQNYMVEW NEAKSDIYCS CRSFEYKGYL CRHAIVVLQM  540
SGVFNIPSKY ILQRWTNAAL SRLPISQKLD EVQSKVRRYN DLCRRAIILS EEGSLSQESY  600
NLALSAIKEA LKQCASVNNS VENEYRPNTS MIRADSGVER VSQCVNNQEK AADPRMTNTT  660
KTCQSVETAL ERQINENNAT RKGKQVSLAG AVNVGSQDGF HQMEMSDMRP THLHNVMPPT  720
QLHNMVPTMF TNVASTHFQN VAATHLHDNR LHR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445993.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_012445994.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A0D2RVS4	0.0	A0A0D2RVS4_GOSRA; Uncharacterized protein
STRING	Gorai.009G072000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Gorai.009G072000.1
Entrez Gene	105769720

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]