PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G070300.2
Common NameB456_009G070300, LOC105769677
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 300aa    MW: 31444.6 Da    PI: 9.7495
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G070300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-063962225
                        -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                        k ++C  f+ t  C++G++C+F H
  Gorai.009G070300.2 39 KSKPCTKFFSTSGCQFGESCHFLH 62
                        7789******************** PP
2zf-CCCH28.62.4e-09104129227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC+ f+    Ck+Gd+C+FaHg+
  Gorai.009G070300.2 104 KTRLCSKFSTPEGCKFGDKCHFAHGE 129
                         8***********************96 PP
3zf-CCCH35.91.2e-11266290126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC +f++ G C +G+rC+FaHg
  Gorai.009G070300.2 266 FKTKLCENFSK-GSCTFGERCHFAHG 290
                         69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.643764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1083765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-53864IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-73962IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-43962IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-13100132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-8101132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526102130IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026102129IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6104129IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.11E-15165243IPR004088K Homology domain, type 1
SMARTSM003222.7E-11172242IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.0E-15173241IPR004088K Homology domain, type 1
PROSITE profilePS5008414.508173237IPR004088K Homology domain, type 1
PfamPF000133.7E-11175239IPR004088K Homology domain, type 1
CDDcd001057.00E-15175238No hitNo description
Gene3DG3DSA:4.10.1000.106.4E-16264297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8265295IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6265291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.831265292IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9266290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEFGGGRKRV RPEAALNGNG GFKKSKQEME SFPTGIGSKS KPCTKFFSTS GCQFGESCHF  60
LHYVPGGIKA VSQMLGNNPA LPAAARNSVV PPSFPDGSSP PAVKTRLCSK FSTPEGCKFG  120
DKCHFAHGEW ELGKRTGPAY EDPRSMGPMP GRMAGRLEPP SPGFGAAASF GASATAKISI  180
DASLAGAIIG KNGVNSKHIC RVTGAKLSIR ENESDPSSRN IELEGTFDQI KQASAMVHEL  240
IINVGSASGS SMKNTSKSGS GSGNNFKTKL CENFSKGSCT FGERCHFAHG TEELRKPGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944672e-41BT094467.1 Soybean clone JCVI-FLGm-18P9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445909.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016689340.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0D2TF650.0A0A0D2TF65_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JGD20.0A0A1U8JGD2_GOSHI; zinc finger CCCH domain-containing protein 14-like
STRINGEOY324490.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-46C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]