PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G070300.1
Common NameB456_009G070300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 318aa    MW: 33770.4 Da    PI: 8.7765
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G070300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.6e-09122147227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC+ f+    Ck+Gd+C+FaHg+
  Gorai.009G070300.1 122 KTRLCSKFSTPEGCKFGDKCHFAHGE 147
                         8***********************96 PP
2zf-CCCH35.81.3e-11284308126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC +f++ G C +G+rC+FaHg
  Gorai.009G070300.1 284 FKTKLCENFSK-GSCTFGERCHFAHG 308
                         69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.5787083IPR000571Zinc finger, CCCH-type
PfamPF146081.37080No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-13118150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-8119150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526120148IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026120147IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6122147IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.7E-15183261IPR004088K Homology domain, type 1
SMARTSM003222.7E-11190260IPR004087K Homology domain
PROSITE profilePS5008414.508191255IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.1E-15191259IPR004088K Homology domain, type 1
CDDcd001054.35E-15193256No hitNo description
PfamPF000134.1E-11193257IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.106.9E-16282315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.831283310IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6283309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-8283313IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9284308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
FISTLFLSPP SALSLLLRTL ASHILSLLFL SLGFRCSANG VWWWTQESEA RGCLERQWRL  60
QEIQASTSGC QFGESCHFLH YVPGGIKAVS QMLGNNPALP AAARNSVVPP SFPDGSSPPA  120
VKTRLCSKFS TPEGCKFGDK CHFAHGEWEL GKRTGPAYED PRSMGPMPGR MAGRLEPPSP  180
GFGAAASFGA SATAKISIDA SLAGAIIGKN GVNSKHICRV TGAKLSIREN ESDPSSRNIE  240
LEGTFDQIKQ ASAMVHELII NVGSASGSSM KNTSKSGSGS GNNFKTKLCE NFSKGSCTFG  300
ERCHFAHGTE ELRKPGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445909.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016689340.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ36e-88C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0D2UHN90.0A0A0D2UHN9_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.009G070300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-46C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]