PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G068400.2

Common Name

B456_009G068400, LOC105768068

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 408aa MW: 46058.9 Da PI: 5.631

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G068400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	68	92	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ Cgk ++++ + +H+++ H Gorai.009G068400.2 68 YSCGVCGKGYRSSKAYSQHLKSraH 92 99******************98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.42E-5	3	36	No hit	No description
SMART	SM00355	54	4	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	6	28	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.06E-6	67	104	No hit	No description
Pfam	PF12874	6.6E-4	68	92	No hit	No description
PROSITE profile	PS50157	9.743	68	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	68	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	92	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.67E-7	168	282	No hit	No description
Pfam	PF12756	3.8E-26	182	283	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	33	231	258	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MPGLTCNACN KEFLDDADQK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QSALAQEKEK 60 QNETPMLYSC GVCGKGYRSS KAYSQHLKSR AHIMQASQGT NHPQEVKAII KPLPRRTVNK 120 PPQPRDRNDD ESQDEWEEVD PEEELVGQAA NSLTHLNVTE DGAGDEMEEE EEEEEELDPC 180 CCFMCDLEHD TIESCMVHMH KLHGFFIPDV EYLKDPEGLL TYLGLKVKRD FMCLYCNERC 240 HPFASLEAVR KHMAAKGHCK VHYGDGDEEE EAELEEFYDY SSSYVDESGK QLVAAGDTGN 300 SVELVGGSEL VITKRSDEGI LSKTLGSREY MRYYRQKPRP SPANNMAITA ALASRYRSMG 360 IATVQSREQM VRMKVMKAMN RGGVEAMRTK VGVKNNVIRN LPKNVPY*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MPGLTCNACN KEFLDDADQK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QSALAQEKEK  60
QNETPMLYSC GVCGKGYRSS KAYSQHLKSR AHIMQASQGT NHPQEVKAII KPLPRRTVNK  120
PPQPRDRNDD ESQDEWEEVD PEEELVGQAA NSLTHLNVTE DGAGDEMEEE EEEEEELDPC  180
CCFMCDLEHD TIESCMVHMH KLHGFFIPDV EYLKDPEGLL TYLGLKVKRD FMCLYCNERC  240
HPFASLEAVR KHMAAKGHCK VHYGDGDEEE EAELEEFYDY SSSYVDESGK QLVAAGDTGN  300
SVELVGGSEL VITKRSDEGI LSKTLGSREY MRYYRQKPRP SPANNMAITA ALASRYRSMG  360
IATVQSREQM VRMKVMKAMN RGGVEAMRTK VGVKNNVIRN LPKNVPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6qik_z	2e-22	4	376	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
6qt0_z	2e-22	4	376	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
6qtz_z	2e-22	4	376	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
6ri5_z	2e-22	4	376	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
6s05_z	2e-22	4	376	6	404	Cytoplasmic 60S subunit biogenesis factor REH1
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Functional Description ? help Back to Top
Source	Description
UniProt	Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250\|UniProtKB:P38344, ECO:0000269\|PubMed:24038679}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443252.1	0.0	PREDICTED: zinc finger protein 622-like
Refseq	XP_012443253.1	0.0	PREDICTED: zinc finger protein 622-like
Swissprot	Q8H1G5	0.0	REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBL	A0A0D2TKT0	0.0	A0A0D2TKT0_GOSRA; Uncharacterized protein
STRING	Gorai.009G068400.1	0.0	(Gossypium raimondii)

Link Out ? help Back to Top
Phytozome	Gorai.009G068400.2
Entrez Gene	105768068

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Schmidt S,Dethloff F,Beine-Golovchuk O,Kopka J The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiol., 2013. 163(4): p. 1623-39 [PMID:24038679] Beine-Golovchuk O, et al. Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiol., 2018. 176(3): p. 2251-2276 [PMID:29382692]