PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G061000.1 | ||||||||
Common Name | B456_009G061000, LOC105768958 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARR-B | ||||||||
Protein Properties | Length: 660aa MW: 72439.7 Da PI: 5.8682 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.4 | 6.6e-28 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G+ekA+Pk+ilelm+v+ Lt+e+v+SHLQk+Rl Gorai.009G061000.1 202 KPRVVWSVELHRKFVAAVNQL-GIEKAVPKKILELMNVENLTRENVASHLQKFRL 255 79*******************.********************************8 PP | |||||||
2 | Response_reg | 77.9 | 3.6e-26 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ + ll+++l+k +y +v++++++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+ +++ e Gorai.009G061000.1 20 VLAVDDDPTCLLLLETLLTKCKY-NVTTTSQAITALKMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTKLVMEG 108 799********************.***************888888*******************87754.558****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel + Gorai.009G061000.1 109 ITHGACDYLLKPVRIEELQN 128 *****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.2E-41 | 17 | 141 | No hit | No description |
SuperFamily | SSF52172 | 1.85E-35 | 17 | 141 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.3E-32 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.505 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.2E-23 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.84E-24 | 21 | 134 | No hit | No description |
SuperFamily | SSF46689 | 1.02E-19 | 199 | 259 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.88 | 199 | 258 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-29 | 200 | 260 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-6 | 204 | 253 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MRVERVISDE NDSFPVGMRV LAVDDDPTCL LLLETLLTKC KYNVTTTSQA ITALKMLREN 60 KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMEGIT HGACDYLLKP 120 VRIEELQNIW QHVIRRKKFD RKDRDGSGSQ DKPYIDSSEA AGLGNVDHNG KFNKKRKDQN 180 EDEDEERDEN GHDNEDLSTQ KKPRVVWSVE LHRKFVAAVN QLGIEKAVPK KILELMNVEN 240 LTRENVASHL QKFRLYLKRI SCVANQQANM AAALGSVDST HLRMGTMNGL GNFHTLAGPD 300 QIHNAAFRSF QHSGVLRRLN TPAGVGISGL PSSGLVQLSP VQNLGNTSTY QRKLQSFVIP 360 GNHNANILQG MPMSLEFYQL QNNRAASHVG QFPSVDNTTV LPVSSISGSL IDAGCSNSPL 420 LGVTSNSLLL EGSSQLPTLH ASNLRDSVSG FPNRSTLSDF TSIAPASNQL HGSKADIQDQ 480 AFPISCNAGK IISSAPQDWN APKKDAPYQS NVPSCSINSL RAVNGDMAQL GQCLDQNNPI 540 FNRNVGFDFV DPLSIKCSEG ENLAMEPSVI EKEGYLMVQP SRQGIYIPDN EGENFAMEPS 600 VIEKEGYLIV QPRRQGSYIP GNLGSLEDLA SAMTKQDHDK GKPTDGDFGY NDYSLRTCI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-26 | 198 | 261 | 1 | 64 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444721.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
TrEMBL | A0A0D2RV30 | 0.0 | A0A0D2RV30_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G061000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-133 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G061000.1 |
Entrez Gene | 105768958 |
Publications ? help Back to Top | |||
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