PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G051000.1
Common NameB456_009G051000, LOC105770213
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 1027aa    MW: 112609 Da    PI: 4.7525
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G051000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.3e-183985148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEde+l +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
  Gorai.009G051000.1 39 KGQWTAEEDEILRKAVQHFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85
                        799****************************9.************986 PP
2Myb_DNA-binding651.4e-2091137148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++eEdel++++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Gorai.009G051000.1  91 KGPWSKEEDELIIELVNKFGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137
                         79******************************.*************97 PP
3Myb_DNA-binding51.13e-16143185145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++WT+eE++ l++a++ +G++ W+  ++ ++ gRt++ +k++w+
  Gorai.009G051000.1 143 KQAWTQEEELALIRAHQIFGNR-WAELSKFLP-GRTDNAIKNHWN 185
                         799*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4263485IPR017930Myb domain
SuperFamilySSF466897.9E-163592IPR009057Homeodomain-like
SMARTSM007172.7E-153887IPR001005SANT/Myb domain
PfamPF002491.7E-153985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2441102IPR009057Homeodomain-like
CDDcd001676.05E-144285No hitNo description
PROSITE profilePS5129433.41686141IPR017930Myb domain
SuperFamilySSF466899.36E-3288184IPR009057Homeodomain-like
SMARTSM007171.5E-1990139IPR001005SANT/Myb domain
PfamPF002493.4E-1991137IPR001005SANT/Myb domain
CDDcd001674.13E-1793137No hitNo description
Gene3DG3DSA:1.10.10.607.0E-28103144IPR009057Homeodomain-like
PROSITE profilePS5129420.4142192IPR017930Myb domain
SMARTSM007174.8E-16142190IPR001005SANT/Myb domain
PfamPF002491.7E-14143186IPR001005SANT/Myb domain
CDDcd001671.83E-12145185No hitNo description
Gene3DG3DSA:1.10.10.602.8E-22145192IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1027 aa     Download sequence    Send to blast
MESDRTVSTP SVGLSISDDA QRMRALHGRT TGPTRRSTKG QWTAEEDEIL RKAVQHFKGK  60
NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE LIIELVNKFG PKKWSTIAQH  120
LPGRIGKQCR ERWHNHLNPS INKQAWTQEE ELALIRAHQI FGNRWAELSK FLPGRTDNAI  180
KNHWNSSIKK KLDSYIASGL LEQFQFSLLA NQSQPTPSSY STIPSNVDDS ASKCRTEAED  240
ISECSQESAM VSCSQSTSDL ANAAVHTREQ FYVTEKLGVA KEKNSSPAPC SEEYYPSLED  300
VNFSMPEISS EGNSTVGNYQ FGLLDLPNIS SLDLGKESTG LPNNCLETSE GCEMMNIAFQ  360
SSVGLNAPVS FINMVTTSDK PEQTLIPDDE CCSVLFSENF TQGSNMVELG GFTNASLSQA  420
SGMQITETGR IPASQSNCLS RSEVLPTSQA VVSPSRLAVE DGTLTFGGES HPLNGQPFGT  480
QDQEFTMNTH DGFIYTIDDH TDNTDLQEQS YLDKDSRKLV PVNTFGLESN VAQTCPAEDD  540
KPTLPAEQDF CGLCYEPPRF LSLDIPFFNC DLIPSGSDMQ QEYSPLGIRQ LMMSTNCISP  600
FRLWDSPSRD NSPDVVLKSA AKTFTGTPSI LKKRHRDLLS PLSERRSEKK LGTDMASNLT  660
KCFSCLDVMF DESGTGNTTQ LSPSEHITNS SVSIKEKENI SQALDEECDN GGVHTQPLED  720
EAPKGSDGTN SLGNIEKGAC EIDTKDKTDI DASYRTVQRP PAVLVEHDIN DILLFSPDDV  780
GLKAGLPLRF SSTRTPKNQY HKSLGAISNQ GLASECLSGN ACIIVSSPTL KIKKSEGPSI  840
ADTTVQCSNS SATLENSVDN TGSNAAIENY NIFGGTPFKR SIESPSAWKS PWFINSFVPG  900
PRIDTDITIE DIGYLMSPAE RSYDAIGLMK QLSEHSAAAY ADALEVLGNE TPQSIIKGRG  960
SNNPNNIDKE NNQLENHSHL ASNIMVERRV LDFSECGTPG KGTENGKSST AMSYSSPSSY  1020
LLKGLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-72391926159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-72391926159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446764.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_012446765.10.0PREDICTED: myb-related protein 3R-1-like
TrEMBLA0A0D2RUD40.0A0A0D2RUD4_GOSRA; Uncharacterized protein
STRINGGorai.009G051000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]