PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G049100.1 | ||||||||
Common Name | B456_009G049100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 841aa MW: 92452.6 Da PI: 5.9783 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.7e-19 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Gorai.009G049100.1 20 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP | |||||||
2 | START | 183.4 | 1.2e-57 | 164 | 372 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++++++++v+s+g g+ Gorai.009G049100.1 164 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGRSGVAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVDVINVLSTGngGT 253 789*******************************************************.8888888888********************** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l +++l+a+++l+p Rdf+ +Ry+ +++g++v++++S++++q+ p+ +++vRaellpSg+li+p+++g+s +++v+h+dl+ +++ Gorai.009G049100.1 254 IELLYMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPSmppAANFVRAELLPSGYLIRPCEGGGSIIHIVDHMDLEPWSV 344 ***********************************************99999*************************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqce 205 +++lr+l++s++ +++t++a+l+++++ Gorai.009G049100.1 345 PEVLRPLYESSTLLAQQTTMAALRHLRQ 372 ***********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.872 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-16 | 17 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-17 | 20 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.66E-17 | 20 | 80 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 21 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-19 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.15E-6 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 27.201 | 154 | 382 | IPR002913 | START domain |
CDD | cd08875 | 8.80E-81 | 158 | 373 | No hit | No description |
SMART | SM00234 | 1.2E-42 | 163 | 373 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.7E-24 | 163 | 369 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.0E-38 | 163 | 374 | No hit | No description |
Pfam | PF01852 | 6.6E-55 | 164 | 372 | IPR002913 | START domain |
Pfam | PF08670 | 5.3E-49 | 698 | 839 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 841 aa Download sequence Send to blast |
MMAVTSSCKE GTKIAMDNGK YVRYTPEQVE ALERLYHECP KPSSMRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF 120 RQQTQNTTLA TTDTSCESVV TSGQHHLTPQ HPPRDASPAG LLSIAEETLT EFLSKATGTA 180 VEWVQMPGMK PGPDSIGIVA ISHGRSGVAA RACGLVGLDP TRVAEILKDR PSWYRDCRAV 240 DVINVLSTGN GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS VMEDGSLVVC ERSLNNTQNG 300 PSMPPAANFV RAELLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTLLAQ 360 QTTMAALRHL RQISQEISQP NVTGWGRRPA ALRALSQKLN KGFNEAVNGF ADEGWSMLES 420 DGVDDVTLLV NSSPSKMMGI NLSYGNGFPS MGNAILCAKA SMLLQNVPPA ILLRFLREHR 480 SEWADSGIDA YSAAAVKAGP CGLPVARGGS FGGQVILPLA HTIEHEEFME VIKLENMGHY 540 REDMIMPGDI FLLQLCSGVD ENAVGTCAEL TFAPIDASFS DDAPIIPSGF RIIPLDSGMD 600 ASSPNRTLDL ASTLEVGAAG NRSTGDNSGR NGSTKSVMTI AFQFVYEIHL QENVATMARQ 660 YVRSIIASVQ RVALALSPSN FGSHAGFRTP PGTPEAQTLG RWICQSYRCY LGVELLEYEG 720 SESILKTLWH HTDAVLCCSL KALPVFTFAN QAGLDMLETT LVALQDISLE KIFDDNGRKA 780 LFAEFPQVMQ QQGFMCLQGG ICLSSMGRPI SYERAVAWKV VNDEENAHCI CFMFVNWSFV 840 * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445945.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-8-like isoform X2 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A0D2TJN3 | 0.0 | A0A0D2TJN3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G049100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2022 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G049100.1 |