PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G047600.1

Common Name

B456_009G047600, LOC105768170

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 363aa MW: 40047.8 Da PI: 7.9782

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G047600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.6e-08	125	145	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd+C FaHg Gorai.009G047600.1 125 ACPDFRK-GSCKKGDSCEFAHG 145 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	6.437	72	109	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.0E-6	120	146	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.83E-5	120	149	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.854	121	147	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-6	125	145	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-5	125	147	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.23	155	179	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	20	155	178	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MMIGESIQPN PTIKIPVGDP FNDPTASFPS VNFNYNNAVS SPCPVDYLGS LHRYLPSNDY 60 ESDSFSDDSD LPVDAFSCDH FRMYEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKFH 120 YSGTACPDFR KGSCKKGDSC EFAHGVFECW LHPARYRTQP CKDGTSCQRR VCFFAHTPEQ 180 LRVLPQQSPR GNGSASADLD YVGSPMRHRL EFVSSPTSIL ASPPISPPSE SPPMSPSGSF 240 NSVSELAASM RSLQLGKSKM NGACSWGLQM GSGFSSPRGS TLRPGFCSSP STPTRTPTRS 300 SLGQFDIWEF NAVQEEPAME RVESGRDLRA RMYAKLSKEN SIGRLEPTGS GPDVGWVTEL 360 VK*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MMIGESIQPN PTIKIPVGDP FNDPTASFPS VNFNYNNAVS SPCPVDYLGS LHRYLPSNDY  60
ESDSFSDDSD LPVDAFSCDH FRMYEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKFH  120
YSGTACPDFR KGSCKKGDSC EFAHGVFECW LHPARYRTQP CKDGTSCQRR VCFFAHTPEQ  180
LRVLPQQSPR GNGSASADLD YVGSPMRHRL EFVSSPTSIL ASPPISPPSE SPPMSPSGSF  240
NSVSELAASM RSLQLGKSKM NGACSWGLQM GSGFSSPRGS TLRPGFCSSP STPTRTPTRS  300
SLGQFDIWEF NAVQEEPAME RVESGRDLRA RMYAKLSKEN SIGRLEPTGS GPDVGWVTEL  360
VK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1454	0.0	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443397.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 23-like
Swissprot	O82199	1e-124	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A0D2TJL3	0.0	A0A0D2TJL3_GOSRA; Uncharacterized protein
STRING	Gorai.009G047600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1249	27	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-115	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G047600.1
Entrez Gene	105768170

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]