PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G032200.1

Common Name

B456_009G032200, LOC105768805

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 997aa MW: 107314 Da PI: 8.0518

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G032200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	5.9e-06	479	499	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ G++CkF+H+ Gorai.009G032200.1 479 YCRHYLK-GRCHEGEKCKFSHD 499 5****.***********7 PP
2	zf-CCCH	20	1.2e-06	533	553	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C ++ G C++Gd C F+H Gorai.009G032200.1 533 PCINYTTKGSCSRGDDCLFSH 553 7******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.554	474	501	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.11E-6	475	499	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0089	475	500	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.338	503	530	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.5E-4	503	529	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.34	531	555	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.1E-6	532	559	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.718	533	556	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.5E-4	533	554	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence Send to blast
MEEPQEAGVG GPFSFPPHRR SHLRSVTYRN LVRLMSLCYG DSPLATAPPI IPLPQTPDNG 60 GNGGEQGGDD VREPGESIVS DGREPVSMVA NGGSEGAVFR DKGLNDTQMV IDEIEQIMGM 120 DDGQDLFDQN DMMVNSSMEV NSFQDGEIGR EQMLMADLEN IMKGNEDYHQ ISNCSAATLG 180 QNQGDNCPGI LLNNQDEHND CPPVVMESGT VGQTQVDMEG GNQKNIDPFG ISSNKSLAIE 240 VSKLSGKVKD QSSSLKTNLM HEKNEIQQKE MELENIIPSN EGMCSPGPVV EKGELEEGEI 300 FGESLLVNES IDILLDDAVV SEKKVGDAVV SGKKVEETLI SGGTFDDKHP YCNEESTVND 360 GTSEFTFVNT TVAPIENKVT PGEFKGSETG QMVCELGMMQ RKECSGKIQK QIGHKNKVIE 420 TKLKKDVGLS NKKKQILTPA QKKEKKKKNK RKKRAEKNRQ LGVKRLKLQT VLKPKTVTYC 480 RHYLKGRCHE GEKCKFSHDT VPLTKSQPCS HFARQSCMKG DDCPFDHQLS KYPCINYTTK 540 GSCSRGDDCL FSHKKPLEGD VASLSVAPDL PLKSSLQSDS DVGLNISRAP PKNANALSYS 600 LGGFSDKSKK QIVADTSSKT PNLACKGVNS LFVSRSSIAE SIQLNQGSSS QKMNESGRVG 660 SQSNQRMLGV RGPASKPSVA ESSKFILGSS SLKMNGSGRL GIQGHQSESH TIQNGNDSPK 720 KKPEMVPRGI NFLSFGKSSL EDSTRKVSLA NGADGYKQQP SDIEGGGGKF SSQLAPSTSS 780 TDKKKSHPAV VPPGINLTLG KLVSSGSSTS SSLPYCSDNV NNGSLPKINY TAGEQRNSSA 840 MSYKLPVSPQ TSGQSSEWLA HKSTPNAREA LISTLAVAKK FDDVKGKSVH GSQQLSDKQY 900 DSNANPWKMP ASLLTTGQSS EKITPKSTPN SSQKALMSTL AFATMFEFGM KKNQSAIRTA 960 VNSETGDSRT GEGTKTDTAK TSKLLDILSS VGSKIK*

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence Send to blast

MEEPQEAGVG GPFSFPPHRR SHLRSVTYRN LVRLMSLCYG DSPLATAPPI IPLPQTPDNG  60
GNGGEQGGDD VREPGESIVS DGREPVSMVA NGGSEGAVFR DKGLNDTQMV IDEIEQIMGM  120
DDGQDLFDQN DMMVNSSMEV NSFQDGEIGR EQMLMADLEN IMKGNEDYHQ ISNCSAATLG  180
QNQGDNCPGI LLNNQDEHND CPPVVMESGT VGQTQVDMEG GNQKNIDPFG ISSNKSLAIE  240
VSKLSGKVKD QSSSLKTNLM HEKNEIQQKE MELENIIPSN EGMCSPGPVV EKGELEEGEI  300
FGESLLVNES IDILLDDAVV SEKKVGDAVV SGKKVEETLI SGGTFDDKHP YCNEESTVND  360
GTSEFTFVNT TVAPIENKVT PGEFKGSETG QMVCELGMMQ RKECSGKIQK QIGHKNKVIE  420
TKLKKDVGLS NKKKQILTPA QKKEKKKKNK RKKRAEKNRQ LGVKRLKLQT VLKPKTVTYC  480
RHYLKGRCHE GEKCKFSHDT VPLTKSQPCS HFARQSCMKG DDCPFDHQLS KYPCINYTTK  540
GSCSRGDDCL FSHKKPLEGD VASLSVAPDL PLKSSLQSDS DVGLNISRAP PKNANALSYS  600
LGGFSDKSKK QIVADTSSKT PNLACKGVNS LFVSRSSIAE SIQLNQGSSS QKMNESGRVG  660
SQSNQRMLGV RGPASKPSVA ESSKFILGSS SLKMNGSGRL GIQGHQSESH TIQNGNDSPK  720
KKPEMVPRGI NFLSFGKSSL EDSTRKVSLA NGADGYKQQP SDIEGGGGKF SSQLAPSTSS  780
TDKKKSHPAV VPPGINLTLG KLVSSGSSTS SSLPYCSDNV NNGSLPKINY TAGEQRNSSA  840
MSYKLPVSPQ TSGQSSEWLA HKSTPNAREA LISTLAVAKK FDDVKGKSVH GSQQLSDKQY  900
DSNANPWKMP ASLLTTGQSS EKITPKSTPN SSQKALMSTL AFATMFEFGM KKNQSAIRTA  960
VNSETGDSRT GEGTKTDTAK TSKLLDILSS VGSKIK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	431	453	KKKQILTPAQKKEKKKKNKRKKR
2	782	786	KKKSH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589643	7e-53	JX589643.1 Gossypium hirsutum clone NBRI_GE24379 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012444445.1	0.0	PREDICTED: uncharacterized protein LOC105768805 isoform X1
TrEMBL	A0A0D2Q894	0.0	A0A0D2Q894_GOSRA; Uncharacterized protein
STRING	Gorai.009G032200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17241	7	8

Link Out ? help Back to Top
Phytozome	Gorai.009G032200.1
Entrez Gene	105768805

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]