PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G029300.1
Common NameB456_009G029300, LOC105770554
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 368aa    MW: 41130.1 Da    PI: 7.4046
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G029300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.8e-07136156526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C +f++ G C+ G+ C FaHg
  Gorai.009G029300.1 136 ACTDFRK-GNCRKGEACEFAHG 156
                         7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-5131157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028132158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5135158IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5136156IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.066166190IPR000571Zinc finger, CCCH-type
SMARTSM0035610166189IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MMLGETHRFN PTVHVPPWPN LDDDQTAEVH SPLNYNAPCN HFNNNSNPPF YLQEALGMLR  60
RYLPSNELDI ESDSELSFHP DSPVDACSCD HFRMYEFKVR RCGRGRAHDW TDCPYAHPGE  120
KARRRDPRKY HYSGTACTDF RKGNCRKGEA CEFAHGVFEC WLHPARYRTQ PCKDGTNCRR  180
RVCFFAHTPE QLRVVSSVDS YDGSPSSAKT LSFSGSPPMS PRAEPSPPIS PMAQSLNRSL  240
ASASINEAVA SMRNLQLGKV KSLPSSWNVQ VGCCSPAFGS PRGAVIRPSF CSLPSTPTQN  300
LTRPAVGPLD FWDEACEEEP QMERVESGRD LRAKMFEKLC KENSLERVNP TQSSGGPNVD  360
WVSDLVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447265.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-141C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A0D2RT070.0A0A0D2RT07_GOSRA; Uncharacterized protein
STRINGGorai.009G029300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-133C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]