PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G029300.1 | ||||||||
Common Name | B456_009G029300, LOC105770554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 368aa MW: 41130.1 Da PI: 7.4046 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.8e-07 | 136 | 156 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +f++ G C+ G+ C FaHg Gorai.009G029300.1 136 ACTDFRK-GNCRKGEACEFAHG 156 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.2E-5 | 131 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 132 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-5 | 135 | 158 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-5 | 136 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.066 | 166 | 190 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 10 | 166 | 189 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MMLGETHRFN PTVHVPPWPN LDDDQTAEVH SPLNYNAPCN HFNNNSNPPF YLQEALGMLR 60 RYLPSNELDI ESDSELSFHP DSPVDACSCD HFRMYEFKVR RCGRGRAHDW TDCPYAHPGE 120 KARRRDPRKY HYSGTACTDF RKGNCRKGEA CEFAHGVFEC WLHPARYRTQ PCKDGTNCRR 180 RVCFFAHTPE QLRVVSSVDS YDGSPSSAKT LSFSGSPPMS PRAEPSPPIS PMAQSLNRSL 240 ASASINEAVA SMRNLQLGKV KSLPSSWNVQ VGCCSPAFGS PRGAVIRPSF CSLPSTPTQN 300 LTRPAVGPLD FWDEACEEEP QMERVESGRD LRAKMFEKLC KENSLERVNP TQSSGGPNVD 360 WVSDLVK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447265.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | Q9M0G2 | 1e-141 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A0D2RT07 | 0.0 | A0A0D2RT07_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G029300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1249 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-133 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G029300.1 |
Entrez Gene | 105770554 |
Publications ? help Back to Top | |||
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