PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G028900.2
Common NameB456_009G028900, LOC105769500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 465aa    MW: 52172.4 Da    PI: 7.0922
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G028900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.65.1e-36471891128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                         lp+G++F+Ptd+el+ e+L++kve+k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++    
  Gorai.009G028900.2  47 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKIQtecd 135
                         799************.99*********5553344444434666646**********.555666799******************7333455 PP

                 NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Gorai.009G028900.2 136 lqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189
                         5544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3843208IPR003441NAC domain
PROSITE profilePS5100532.99247208IPR003441NAC domain
PfamPF023652.4E-1648189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MNKSNLMSSI TSSHLIDAKL EEHQLCGSKH CPGCGTKLEG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVEA KDMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSK HFFHRPSKAY  120
TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT  180
NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRT NAATTVDGTT NVVVVDPNNI  240
RRDSGIRSCS SKEQLIPLRD EVSGAGIAPA ALSSFASAMD IQHLKSDHHL SFTPFSKSFD  300
QVGLAEASAA RETPTQGTGQ EIPEHHRGPN HMAHDHHHHL LLHHHQQQQQ QQHQIATTAF  360
HISRPSHPIS TIISPPPLHH TSIILDEDSF HVSRIMLQNE SFQQQQEQQS HKLGGRSATG  420
LEELIMGCTS TDIKEESSIT NPQEAEWLKY SSFWPDPDNH AHHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-134518913140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472000.0KC847200.1 Gossypium hirsutum NAC domain protein NAC23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445629.10.0PREDICTED: NAC domain-containing protein 62-like
RefseqXP_012445631.10.0PREDICTED: NAC domain-containing protein 62-like
RefseqXP_012445632.10.0PREDICTED: NAC domain-containing protein 62-like
RefseqXP_012445633.10.0PREDICTED: NAC domain-containing protein 62-like
RefseqXP_012445634.10.0PREDICTED: NAC domain-containing protein 62-like
RefseqXP_012445635.10.0PREDICTED: NAC domain-containing protein 62-like
RefseqXP_012445636.10.0PREDICTED: NAC domain-containing protein 62-like
RefseqXP_012445637.10.0PREDICTED: NAC domain-containing protein 62-like
RefseqXP_012445638.10.0PREDICTED: NAC domain-containing protein 62-like
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0D2UFB90.0A0A0D2UFB9_GOSRA; Uncharacterized protein
STRINGGorai.009G028900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-144NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]