PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G025900.8 | ||||||||
Common Name | B456_009G025900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CPP | ||||||||
Protein Properties | Length: 389aa MW: 42357.9 Da PI: 7.6459 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 42.7 | 1.1e-13 | 61 | 97 | 1 | 37 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCk 37 k++kgC+Ck+s Cl+kYCeCf+a+ C e+CkC +Ck Gorai.009G025900.8 61 KHSKGCHCKRSGCLRKYCECFQANILCYESCKCMGCK 97 589*********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 24.321 | 1 | 101 | IPR005172 | CRC domain |
SMART | SM01114 | 2.8E-12 | 61 | 100 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.5E-10 | 64 | 97 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MYCDECNCVN CYNNVEYEAV RRDSVGATLK SNLNAFRPKI NSSSHGAKDN KEAGEVLMLG 60 KHSKGCHCKR SGCLRKYCEC FQANILCYES CKCMGCKKFK GSEERQALFH GDYANNMAYI 120 QQAANATTTG AIGSSGYASA PVSKKRKSQE FLLGSTAKDP SVHSLGHLQQ TNLVRASIPS 180 SSLSSMSVSC AGTAVGPSKL SYRSLLADII QKQDLKELCS VLVVLSREAA KILADQRSLI 240 EGAEDHSEIS FASSTQDRLE SQKDFIAEKT RADNCSSANQ AVKSGPENSC TDVADMPEGS 300 LMSPGTLALM CDEQDTTFTA AVSQLPCGKG MIEIDAEHER VVLTKFRDCL NRLITFGEIK 360 GKFPTPFSEN SIHNELYSMQ QKGRNFKW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 8e-21 | 15 | 110 | 47 | 132 | Protein lin-54 homolog |
5fd3_B | 8e-21 | 15 | 110 | 47 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445009.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
Swissprot | Q9SZD1 | 1e-131 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A0D2Q7R8 | 0.0 | A0A0D2Q7R8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G025900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-117 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G025900.8 |
Publications ? help Back to Top | |||
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