PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G025900.8
Common NameB456_009G025900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 389aa    MW: 42357.9 Da    PI: 7.6459
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G025900.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.71.1e-136197137
                 TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCk 37
                        k++kgC+Ck+s Cl+kYCeCf+a+  C e+CkC +Ck
  Gorai.009G025900.8 61 KHSKGCHCKRSGCLRKYCECFQANILCYESCKCMGCK 97
                        589*********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163424.3211101IPR005172CRC domain
SMARTSM011142.8E-1261100IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.5E-106497IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MYCDECNCVN CYNNVEYEAV RRDSVGATLK SNLNAFRPKI NSSSHGAKDN KEAGEVLMLG  60
KHSKGCHCKR SGCLRKYCEC FQANILCYES CKCMGCKKFK GSEERQALFH GDYANNMAYI  120
QQAANATTTG AIGSSGYASA PVSKKRKSQE FLLGSTAKDP SVHSLGHLQQ TNLVRASIPS  180
SSLSSMSVSC AGTAVGPSKL SYRSLLADII QKQDLKELCS VLVVLSREAA KILADQRSLI  240
EGAEDHSEIS FASSTQDRLE SQKDFIAEKT RADNCSSANQ AVKSGPENSC TDVADMPEGS  300
LMSPGTLALM CDEQDTTFTA AVSQLPCGKG MIEIDAEHER VVLTKFRDCL NRLITFGEIK  360
GKFPTPFSEN SIHNELYSMQ QKGRNFKW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-211511047132Protein lin-54 homolog
5fd3_B8e-211511047132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445009.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD11e-131TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0D2Q7R80.0A0A0D2Q7R8_GOSRA; Uncharacterized protein
STRINGGorai.009G025900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-117Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]