PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G025900.3 | ||||||||
Common Name | B456_009G025900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CPP | ||||||||
Protein Properties | Length: 532aa MW: 57247.9 Da PI: 8.1804 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 39.6 | 1.1e-12 | 68 | 106 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+ nCk+s+Clk+YCeCf++g +C+e C+C +C N+ e Gorai.009G025900.3 68 KQKHSNCKHSRCLKLYCECFSSGMYCDE-CNCVNCYNNVE 106 78999**********************9.********976 PP | |||||||
2 | TCR | 42.1 | 1.7e-13 | 151 | 187 | 1 | 37 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCk 37 k++kgC+Ck+s Cl+kYCeCf+a+ C e+CkC +Ck Gorai.009G025900.3 151 KHSKGCHCKRSGCLRKYCECFQANILCYESCKCMGCK 187 589*********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.6E-13 | 67 | 107 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 30.921 | 68 | 191 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.6E-10 | 70 | 104 | IPR005172 | CRC domain |
SMART | SM01114 | 2.8E-12 | 151 | 190 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.7E-10 | 154 | 187 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MDVASWSPAA ASVNQQQQPQ IKQQVAATIS VAAGQSHPLT TASSSIVKPE SLKAKTRPNE 60 LNDEAPKKQK HSNCKHSRCL KLYCECFSSG MYCDECNCVN CYNNVEYEAV RRDSVGATLK 120 SNLNAFRPKI NSSSHGAKDN KEAGEVLMLG KHSKGCHCKR SGCLRKYCEC FQANILCYES 180 CKCMGCKKFK GSEERQALFH GDYANNMAYI QQAANATTTG AIGSSGYASA PVSKKRKSQE 240 FLLGSTAKDP SVHSLGHLQQ TNLVRASIPS SSLSSMSVSC AGTAVGPSKL SYRSLLADII 300 QKQDLKELCS VLVVLSREAA KILADQRSLI EGAEDHSEIS FASSTQDRLE SQKDFIAEKT 360 RADNCSSANQ AVKSGPENSC TDVADMPEGS LMSPGTLALM CDEQDTTFTA AVSQLPCGKG 420 MIEIDAEHER VVLTKFRDCL NRLITFGEIK GMCCSTLARM EIGSQRCPLS HRAETGNQQG 480 FVNYGVPKTF FSPTVRTSKT AAVVATADND LPTVPPFPGN GDAKSKPAKQ M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 7e-28 | 60 | 200 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 7e-28 | 60 | 200 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016689960.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 1e-155 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A0D2RSR3 | 0.0 | A0A0D2RSR3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G025900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-137 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G025900.3 |
Publications ? help Back to Top | |||
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