PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G025900.2
Common NameB456_009G025900, LOC105769119
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 497aa    MW: 53208.2 Da    PI: 7.7002
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G025900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR21.93.5e-0748711741
                 TCR 17 YCeCfaagkkCseeCkCedCkNkee 41
                        YCeCf++g +C+e C+C +C N+ e
  Gorai.009G025900.2 48 YCECFSSGMYCDE-CNCVNCYNNVE 71
                        ************9.********976 PP

2TCR42.31.5e-13116152137
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCk 37 
                         k++kgC+Ck+s Cl+kYCeCf+a+  C e+CkC +Ck
  Gorai.009G025900.2 116 KHSKGCHCKRSGCLRKYCECFQANILCYESCKCMGCK 152
                         589*********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163426.72936156IPR005172CRC domain
PfamPF036381.1E-44869IPR005172CRC domain
SMARTSM011140.0764872IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011142.8E-12116155IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.4E-10119152IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDVASWSPAA ASVNQQQQPQ IKQQVAATIS VAAGQSHPLT TASSSIVYCE CFSSGMYCDE  60
CNCVNCYNNV EYEAVRRDSV GATLKSNLNA FRPKINSSSH GAKDNKEAGE VLMLGKHSKG  120
CHCKRSGCLR KYCECFQANI LCYESCKCMG CKKFKGSEER QALFHGDYAN NMAYIQQAAN  180
ATTTGAIGSS GYASAPVSKK RKSQEFLLGS TAKDPSVHSL GHLQQTNLVR ASIPSSSLSS  240
MSVSCAGTAV GPSKLSYRSL LADIIQKQDL KELCSVLVVL SREAAKILAD QRSLIEGAED  300
HSEISFASST QDRLESQKDF IAEKTRADNC SSANQAVKSG PENSCTDVAD MPEGSLMSPG  360
TLALMCDEQD TTFTAAVSQL PCGKGMIEID AEHERVVLTK FRDCLNRLIT FGEIKGMCCS  420
TLARMEIGSQ RCPLSHRAET GNQQGFVNYG VPKTFFSPTV RTSKTAAVVA TADNDLPTVP  480
PFPGNGDAKS KPAKQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-224716524132Protein lin-54 homolog
5fd3_B1e-224716524132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445008.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-141TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0D2TI170.0A0A0D2TI17_GOSRA; Uncharacterized protein
STRINGGorai.009G025900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-123Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]