PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G025900.2 | ||||||||
Common Name | B456_009G025900, LOC105769119 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CPP | ||||||||
Protein Properties | Length: 497aa MW: 53208.2 Da PI: 7.7002 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 21.9 | 3.5e-07 | 48 | 71 | 17 | 41 |
TCR 17 YCeCfaagkkCseeCkCedCkNkee 41 YCeCf++g +C+e C+C +C N+ e Gorai.009G025900.2 48 YCECFSSGMYCDE-CNCVNCYNNVE 71 ************9.********976 PP | |||||||
2 | TCR | 42.3 | 1.5e-13 | 116 | 152 | 1 | 37 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCk 37 k++kgC+Ck+s Cl+kYCeCf+a+ C e+CkC +Ck Gorai.009G025900.2 116 KHSKGCHCKRSGCLRKYCECFQANILCYESCKCMGCK 152 589*********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 26.729 | 36 | 156 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.1E-4 | 48 | 69 | IPR005172 | CRC domain |
SMART | SM01114 | 0.076 | 48 | 72 | IPR033467 | Tesmin/TSO1-like CXC domain |
SMART | SM01114 | 2.8E-12 | 116 | 155 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.4E-10 | 119 | 152 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MDVASWSPAA ASVNQQQQPQ IKQQVAATIS VAAGQSHPLT TASSSIVYCE CFSSGMYCDE 60 CNCVNCYNNV EYEAVRRDSV GATLKSNLNA FRPKINSSSH GAKDNKEAGE VLMLGKHSKG 120 CHCKRSGCLR KYCECFQANI LCYESCKCMG CKKFKGSEER QALFHGDYAN NMAYIQQAAN 180 ATTTGAIGSS GYASAPVSKK RKSQEFLLGS TAKDPSVHSL GHLQQTNLVR ASIPSSSLSS 240 MSVSCAGTAV GPSKLSYRSL LADIIQKQDL KELCSVLVVL SREAAKILAD QRSLIEGAED 300 HSEISFASST QDRLESQKDF IAEKTRADNC SSANQAVKSG PENSCTDVAD MPEGSLMSPG 360 TLALMCDEQD TTFTAAVSQL PCGKGMIEID AEHERVVLTK FRDCLNRLIT FGEIKGMCCS 420 TLARMEIGSQ RCPLSHRAET GNQQGFVNYG VPKTFFSPTV RTSKTAAVVA TADNDLPTVP 480 PFPGNGDAKS KPAKQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-22 | 47 | 165 | 24 | 132 | Protein lin-54 homolog |
5fd3_B | 1e-22 | 47 | 165 | 24 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445008.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 1e-141 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A0D2TI17 | 0.0 | A0A0D2TI17_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G025900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-123 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G025900.2 |
Entrez Gene | 105769119 |
Publications ? help Back to Top | |||
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