PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G022100.1

Common Name

B456_009G022100, LOC105770916

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 472aa MW: 51014.6 Da PI: 6.9471

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G022100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.2e-32	250	305	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Gorai.009G022100.1 250 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVEGLTNDEVKSHLQKYRLH 305 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.407	247	307	IPR017930	Myb domain
SuperFamily	SSF46689	1.15E-16	248	308	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-28	248	308	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-26	250	305	IPR006447	Myb domain, plants
Pfam	PF00249	8.4E-7	252	303	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MASPTGLTLD CKPHSYSMLL KSFGDQQIDQ TQKLEDFLGR LEEERLKIDA FKRELPLCMQ 60 LLTNAVETSR QQLHACRANQ GSRPVLEEFI PLKNSSSENS DKSQNISDKA NWMTSAQLWS 120 QAGNETKPPQ SSVASPKEAD IGFNVSPKLG LDTKQRNGGA FLPFSKDRQN PCPGSTLQPL 180 PDLALASMNE DMDDKKCSET ENGCQRRENS GRTGNGGALV EQGKGTSCNA AEGQTTNGNT 240 NTNTGQPHRK ARRCWSPDLH RRFVNALQML GGSQVATPKQ IRELMKVEGL TNDEVKSHLQ 300 KYRLHTRRSS PSPQAPGAPT PQLVVLGGIW VSPEYATAAA AAYGGTPTLY GAHHPAAPHA 360 PPPHFCASPV PQEFYSATAT PAPTPPPQLH HHTLQQQLHM YKSTSQAHSL PESDVRGAGD 420 HSESIEDGKS ESSSWKGESG ENGGGADQRK GLAALREDGE ESNGSEITLK F*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MASPTGLTLD CKPHSYSMLL KSFGDQQIDQ TQKLEDFLGR LEEERLKIDA FKRELPLCMQ  60
LLTNAVETSR QQLHACRANQ GSRPVLEEFI PLKNSSSENS DKSQNISDKA NWMTSAQLWS  120
QAGNETKPPQ SSVASPKEAD IGFNVSPKLG LDTKQRNGGA FLPFSKDRQN PCPGSTLQPL  180
PDLALASMNE DMDDKKCSET ENGCQRRENS GRTGNGGALV EQGKGTSCNA AEGQTTNGNT  240
NTNTGQPHRK ARRCWSPDLH RRFVNALQML GGSQVATPKQ IRELMKVEGL TNDEVKSHLQ  300
KYRLHTRRSS PSPQAPGAPT PQLVVLGGIW VSPEYATAAA AAYGGTPTLY GAHHPAAPHA  360
PPPHFCASPV PQEFYSATAT PAPTPPPQLH HHTLQQQLHM YKSTSQAHSL PESDVRGAGD  420
HSESIEDGKS ESSSWKGESG ENGGGADQRK GLAALREDGE ESNGSEITLK F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-14	250	303	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-14	250	303	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-14	250	303	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-14	250	303	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269\|PubMed:25132385}.
Uniprot	TISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269\|PubMed:25132385}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269\|PubMed:25132385}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269\|PubMed:25132385}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447737.1	0.0	PREDICTED: transcription activator GLK2-like
Swissprot	Q9ZQ85	1e-135	EFM_ARATH; Myb family transcription factor EFM
TrEMBL	A0A0D2Q7J8	0.0	A0A0D2Q7J8_GOSRA; Uncharacterized protein
STRING	Gorai.009G022100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7134	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-117	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G022100.1
Entrez Gene	105770916

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]