PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G008800.1
Common NameB456_009G008800, LOC105765869
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 373aa    MW: 42067.5 Da    PI: 7.9154
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G008800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51.1e-1549108155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  Gorai.009G008800.1  49 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEESAAHAYDLAALKYWG 108
                         57*******************999955656446*************************98 PP
2AP251.13.2e-16151202155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Gorai.009G008800.1 151 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 202
                         89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-1249108IPR001471AP2/ERF domain
CDDcd000184.86E-2049118No hitNo description
SuperFamilySSF541714.38E-1749118IPR016177DNA-binding domain
SMARTSM003808.1E-2750122IPR001471AP2/ERF domain
PROSITE profilePS5103220.16550116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1650117IPR001471AP2/ERF domain
PRINTSPR003674.3E-65162IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17151212IPR016177DNA-binding domain
CDDcd000184.36E-24151212No hitNo description
PfamPF008475.9E-12151202IPR001471AP2/ERF domain
SMARTSM003801.2E-24152216IPR001471AP2/ERF domain
PROSITE profilePS5103218.334152210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17152211IPR001471AP2/ERF domain
PRINTSPR003674.3E-6192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTKLSQVNQK NSAQSGSVNN NISTSNDVTK VKKRTRRSFP RDSPPQRSSI YRGVTRHRWT  60
GRYEAHLWDK NCWNESQNKK GRQVYLGAYD DEESAAHAYD LAALKYWGQD TILNFPVSTY  120
QKELKEMENQ SREEYIGSLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL  180
GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYIKWLKP NQTNPTTPNS NIDATTASTL  240
ASPSHHQQHN PSFFTTTDDD NRQPQGTCVG IPSETLLTQP RPGNATSALG LLLQSSKFKE  300
MMEMTSAVVV DQCQLTPPPS TTSEPTRYSF PENVETYLEC QDSSSLADED RDIIFGELNS  360
FMAPMFSCDI DA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440585.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_016690345.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-119AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2Q6I20.0A0A0D2Q6I2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JJ900.0A0A1U8JJ90_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
STRINGGorai.009G008800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-109ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]