PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G006200.1
Common NameB456_009G006200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 502aa    MW: 56034.3 Da    PI: 6.0006
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G006200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.12.6e-20206261155
             G2-like   1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+rl W+ eL ++Fv+av+ L  Gse+  Pk+il++m+ +g+t++h+ SHLQkYRl
  Gorai.009G006200.1 206 KKRLAWSRELDAKFVKAVQILEkGSENVHPKRILDVMNEPGVTRAHISSHLQKYRL 261
                         78*******************55********************************8 PP
2Response_reg59.12.4e-206917011112
                         HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEE CS
        Response_reg  11 rellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdfls 99 
                         ++ l+ +l + +y +v++a+++ e++e+l++++  +D++l+D++  ++++++++++i  e  +lp+i+vta ++ e +++ l  Ga d++ 
  Gorai.009G006200.1  69 LQYLCAVLHNCNY-KVKSASSAVEVIEILRTNKhgIDIVLVDVDTADLNAFKVMETIGLET-NLPVIMVTADSNLENITKGLAHGAVDCII 157
                         677889999999*.***************887778**********************8777.8**************************** PP

                         SS--HHHHHHHHH CS
        Response_reg 100 Kpfdpeelvkavk 112
                         Kpf++e++ +++k
  Gorai.009G006200.1 158 KPFEMEQIKNTIK 170
                         *********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001562.28E-1548172No hitNo description
SMARTSM004485.5E-1357169IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.92958173IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.7E-2168177IPR011006CheY-like superfamily
PfamPF000722.1E-1468169IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.1E-2268189No hitNo description
SuperFamilySSF466898.78E-14204265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-21205265IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-17206261IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MWKLELACLE YRIPSDNGVV QPKKVAFVGS VINKMEEIFL ENLIDPQIDD DHTLKELTVF  60
AFNTQVLSLQ YLCAVLHNCN YKVKSASSAV EVIEILRTNK HGIDIVLVDV DTADLNAFKV  120
METIGLETNL PVIMVTADSN LENITKGLAH GAVDCIIKPF EMEQIKNTIK SHVASNKTRG  180
QNLNPLPGSN ARMAVKDACC SSKLKKKRLA WSRELDAKFV KAVQILEKGS ENVHPKRILD  240
VMNEPGVTRA HISSHLQKYR LALKKRKADT NKQGLEVEPT NYCLKKREVG NFNADRRRLA  300
VQSFNGVMSP SSSSPDPKKQ SQSLVYSCID DHGPEFQTPD FYYNNHCLET NIQPRNVESE  360
HVSGTTTLSP YFNGVDSKPS ILSSAAVYPF PNAVFLEPEA NIAFHSHFDA ISVPNPLYGF  420
TIDCSTDVQY PSSTVFARNS ETHAVQNGTT ISTSDTSSYH YVKPENEVSE TYNSQIECSL  480
FEEESFDWYS LLDDQYLSSL T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841053e-69JX584105.1 Gossypium hirsutum clone NBRI_GE17310 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441770.10.0PREDICTED: two-component response regulator ARR10-like
TrEMBLA0A0D2TB120.0A0A0D2TB12_GOSRA; Uncharacterized protein
STRINGGorai.009G006200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2076546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.18e-39response regulator 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]