PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G295800.1
Common NameB456_008G295800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 434aa    MW: 49072 Da    PI: 6.4093
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G295800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-18195241148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT eEd  l+++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  Gorai.008G295800.1 195 KGQWTMEEDRMLIQLVEQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 241
                         799*****************************.*************97 PP
2Myb_DNA-binding56.18.3e-18247289145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++ W++eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Gorai.008G295800.1 247 KDTWSEEEDKVLIQAHREIGNK-WAEIAKRLP-GRTENSIKNHWN 289
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.007190245IPR017930Myb domain
SuperFamilySSF466895.39E-32194288IPR009057Homeodomain-like
SMARTSM007175.0E-17194243IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-26196246IPR009057Homeodomain-like
PfamPF139211.7E-19198256No hitNo description
CDDcd001678.02E-16198241No hitNo description
SMARTSM007179.1E-17246294IPR001005SANT/Myb domain
PROSITE profilePS5129421.233246296IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-22247294IPR009057Homeodomain-like
CDDcd001673.40E-13249292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MEFDPKLREN MSPQHQHHPM MLSENNILKP LQTTTPLSSS SSKDYYLQDF HHLDDDDDDQ  60
IQVNVSTSSW NPVFGVNAAC YDPFDAFPYG CSTNRVDFYE CKPFAADHNT GNLGHGHVMG  120
NFQSSVGLLN LRSTTSNDVI MMGSDVGYLP SFEFPNLGDE VPCVTAENGY RLLVDSTSSR  180
IRTNWKGRKK TNGVKGQWTM EEDRMLIQLV EQYGVRKWSH IAQMLPGRIG KQCRERWHNH  240
LRPDIKKDTW SEEEDKVLIQ AHREIGNKWA EIAKRLPGRT ENSIKNHWNA TKRRQFSKRK  300
CRSKYPRGSI LQEYIKSLNL DSTAAAAARS HEKASDGAAV KAADNKSSSI KQPQGLDIGP  360
STDRLVPEYE CDEVHEFSFD EKLLQESCSI ELLLDQIPST AAMADEKSFQ MGDMGAVKKE  420
MDLVEMISAH PNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-461942953104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6501060.0HQ650106.1 Gossypium hirsutum clone BAC 067L14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440417.10.0PREDICTED: transcription factor MYB98-like
TrEMBLA0A0D2RPR60.0A0A0D2RPR6_GOSRA; Uncharacterized protein
STRINGGorai.008G295800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-98myb domain protein 98
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]