PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G293300.2 | ||||||||
Common Name | B456_008G293300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 678aa MW: 74482.3 Da PI: 6.7012 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.3 | 8.4e-21 | 26 | 81 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r +L+++lgL rq+k+WFqNrR+++k Gorai.008G293300.2 26 KKPYHRHTAHQIQRLESMFKECPHPDEKQRLHLSRELGLAPRQIKFWFQNRRTQMK 81 78999************************************************998 PP | |||||||
2 | START | 120.1 | 3.1e-38 | 303 | 413 | 94 | 206 |
EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllr 182 m+ elq+lsplvp R+f+++Ry++q ++g w+iv vS d +q+ ++ R+++lpSg+li++++ng+skvtw+ehv+ ++++p h l+r Gorai.008G293300.2 303 MYEELQVLSPLVPtREFYTLRYCQQIEQGLWAIVNVSYDLPQFASQ----CRSHRLPSGCLIQDMPNGYSKVTWLEHVEIEDKTPiHRLYR 389 899****************************************987....***************************************** PP HHHHHHHHHHHHHHHHHTXXXXXX CS START 183 slvksglaegaktwvatlqrqcek 206 lv+sg a+ga +w+ tlqr ce+ Gorai.008G293300.2 390 DLVHSGSAFGAERWLTTLQRMCER 413 **********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.25E-20 | 11 | 83 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 11 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.75 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-19 | 25 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.55E-19 | 26 | 84 | No hit | No description |
Pfam | PF00046 | 2.1E-18 | 26 | 81 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 58 | 81 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 37.664 | 215 | 416 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.02E-31 | 216 | 414 | No hit | No description |
CDD | cd08875 | 3.54E-95 | 219 | 412 | No hit | No description |
SMART | SM00234 | 5.3E-26 | 224 | 413 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.6E-6 | 303 | 395 | IPR023393 | START-like domain |
Pfam | PF01852 | 7.1E-33 | 303 | 413 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.06E-22 | 434 | 669 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence Send to blast |
MDCGSGGVGA SGSGGDHDSS DLSRRKKPYH RHTAHQIQRL ESMFKECPHP DEKQRLHLSR 60 ELGLAPRQIK FWFQNRRTQM KAQHERADNS ALRAENDKIR CENIAIREAL KNVICPSCGG 120 PPVTEDSYFD DQKMRMENAQ LKEELDRVSS IAAKYIGRPI SQLPPVQPVH ISSLDIRMAS 180 FDGYGVGAGP SLDLDLLPGS SSSMPNLPFQ PVVISDMDKS LMSDIAANAM EELLRLLQTN 240 EPLWIKSNND GKDALNLESY ERIFPKPHNT HFKSPNIRVE ASRDSGVVIM NGLALVDMFM 300 DSMYEELQVL SPLVPTREFY TLRYCQQIEQ GLWAIVNVSY DLPQFASQCR SHRLPSGCLI 360 QDMPNGYSKV TWLEHVEIED KTPIHRLYRD LVHSGSAFGA ERWLTTLQRM CERFACLMVS 420 STSTRDLGGV IPSPEGKRSM MKLAQRMVNN FCTSVGTSNS HRSTTLSGSN EVGVRVTVHK 480 SSDPGQPNGI VLSAATTFWL PVSPQNVFNF FKDERTRPQW DVLSNGNAVQ EVAHIANGSH 540 PGNCISVLRA FNTSHNNMLI LQESCIDSSG SLVVYCPVDL PAINVAMSGE DPSYIPLLPS 600 GFTITPDGHL EQGDGASTSS STGHGRSSGG SLITVAFQIL VSSLPSAKLN LDSVTTVNNL 660 IGTTVQQIKA ALNCPSS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ595848 | 0.0 | KJ595848.1 Gossypium hirsutum homeodomain protein HOX3-D (HOX3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012440361.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A0D2RPK1 | 0.0 | A0A0D2RPK1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G293300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G293300.2 |