PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G288900.1

Common Name

B456_008G288900, LOC105765654

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 1081aa MW: 122752 Da PI: 8.1979

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G288900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.1	2.3e-09	434	479	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT+eEd+ l+ v+++G ++W Ia + +Rt+ qc r+q Gorai.008G288900.1 434 RNPWTAEEDKNLLLIVQEMGIDNWFDIAVSLASNRTPFQCLARYQR 479 79****************************9*********96 PP
2	Myb_DNA-binding	42.2	1.9e-13	488	531	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd++l av+ +G +W ++a+t+ gRt+ qc +rw k Gorai.008G288900.1 488 REWTEEEDDQLRIAVEVFGESDWQSVASTLK-GRTGTQCSNRWKK 531 68**************************9.*********98 PP
3	Myb_DNA-binding	51.1	3e-16	541	584	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT +Ed++l+ av ++G+++W++Ia+ ++ gRt qc++rw + Gorai.008G288900.1 541 GRWTRDEDKRLKVAVLLFGPKNWRKIAQVVP-GRTQVQCRERWVN 584 8****************************.*********87 PP
4	Myb_DNA-binding	41.1	4.2e-13	594	636	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd +l a++++G W+++a ++ Rt++qc rw ++ Gorai.008G288900.1 594 IWTEEEDSRLEAAIEEHGYC-WSKVATCVA-SRTDNQCWRRWKTL 636 5***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.017	329	428	IPR017877	Myb-like domain
SMART	SM00717	5.1E-4	333	430	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-12	336	352	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-12	401	441	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.0E-16	410	477	IPR009057	Homeodomain-like
PROSITE profile	PS50090	10.011	429	481	IPR017877	Myb-like domain
SMART	SM00717	1.4E-10	433	483	IPR001005	SANT/Myb domain
Pfam	PF13921	1.2E-8	437	483	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-14	442	489	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.66E-20	465	536	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.84	482	533	IPR017930	Myb domain
SMART	SM00717	1.2E-11	486	535	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-11	488	531	IPR001005	SANT/Myb domain
CDD	cd00167	9.58E-10	489	533	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-16	490	536	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.891	534	590	IPR017930	Myb domain
SuperFamily	SSF46689	7.61E-25	538	633	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-14	539	588	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.2E-18	541	589	IPR009057	Homeodomain-like
Pfam	PF00249	7.8E-15	541	584	IPR001005	SANT/Myb domain
CDD	cd00167	6.26E-12	542	586	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-15	590	636	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-12	591	639	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.255	593	641	IPR017930	Myb domain
CDD	cd00167	3.07E-10	595	636	No hit	No description
Pfam	PF00249	5.7E-11	595	636	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1081 aa Download sequence Send to blast
MSLKDEYDTV NDEEEEVDDV ELSGNENGVG FDEDMEALKK ACLRTGTDLN GLDIVSVDNE 60 RPSTSTAASP ASADSGSEDD LEIFRSIRNR LALSEDVYEP LSLKPLCTFP PISSDEDAED 120 DFETLRIIQK RFLAYSTDYT WKNSREDNME KTDPIYMTRT PLKDATGNDI CEKFQDYEQN 180 GNISHVSSDN AEMQPLSLVQ CDQSDVNVLS TYKSSRFPKS AQLLFDAIKK NRSYQMFLRS 240 KLAHIEVKIE ENKKLKERVK ILRDFQVSCK KLTGRALSAK KDPRIQLISA RKLRTFEDPE 300 INDKRVTADY GPLENSSVAS YRMALIDFPL KLERKNWSRE ERENLEKGIR QQFQERALQV 360 SVGWLSTSDG SPQDGNNLDG IIATVKDLEI TPERIREFLP KVDWNQLASF YVKGRCGAEC 420 ETRWLNHEDP LINRNPWTAE EDKNLLLIVQ EMGIDNWFDI AVSLASNRTP FQCLARYQRS 480 LNPCILKREW TEEEDDQLRI AVEVFGESDW QSVASTLKGR TGTQCSNRWK KSLHPTRQRV 540 GRWTRDEDKR LKVAVLLFGP KNWRKIAQVV PGRTQVQCRE RWVNSLDPAL NVGIWTEEED 600 SRLEAAIEEH GYCWSKVATC VASRTDNQCW RRWKTLHPEE VPLLQEARKI RKAALISNFV 660 DRESERPALG PNDFNIQLPM ITATSEPSKE KGKRRRRRPE YEKENAAALR LSPEKRSHKS 720 CRKGAQTTTG RNPPLENNNC TEPAEDVTFQ KKRKREPPSG NNNHIKPAQH VAIQKKRKQP 780 LSGHVNCSDR KQDGAVQTYK RKQQSGSSKF VKSVQDNCSS HLLSALCITG NHEAESFGSS 840 LTVKRRKNHK ASPKQFSKRS MCTESHEEQY SICSEISVFS GGDDGAEVMQ NSGVESEILG 900 ADDTSRKAKP RSKRKTCMNS LTSQSSRTIV AEHFKNLSAA KNTKKNRTKQ QQSKSRKSNK 960 PSGDENGQTD GDHQTLACFL RNKLKKGGCE IVDNACLSEG MDERSKIDQT QFSLQHCDGE 1020 NGTNIEIVDV VNKTVASRDI VREPTKINKE DITLACLCKR LKKKRCVTIA QSSNHGDMSE 1080 *

Sequence ? help Back to Top

Protein Sequence Length: 1081 aa Download sequence Send to blast

MSLKDEYDTV NDEEEEVDDV ELSGNENGVG FDEDMEALKK ACLRTGTDLN GLDIVSVDNE  60
RPSTSTAASP ASADSGSEDD LEIFRSIRNR LALSEDVYEP LSLKPLCTFP PISSDEDAED  120
DFETLRIIQK RFLAYSTDYT WKNSREDNME KTDPIYMTRT PLKDATGNDI CEKFQDYEQN  180
GNISHVSSDN AEMQPLSLVQ CDQSDVNVLS TYKSSRFPKS AQLLFDAIKK NRSYQMFLRS  240
KLAHIEVKIE ENKKLKERVK ILRDFQVSCK KLTGRALSAK KDPRIQLISA RKLRTFEDPE  300
INDKRVTADY GPLENSSVAS YRMALIDFPL KLERKNWSRE ERENLEKGIR QQFQERALQV  360
SVGWLSTSDG SPQDGNNLDG IIATVKDLEI TPERIREFLP KVDWNQLASF YVKGRCGAEC  420
ETRWLNHEDP LINRNPWTAE EDKNLLLIVQ EMGIDNWFDI AVSLASNRTP FQCLARYQRS  480
LNPCILKREW TEEEDDQLRI AVEVFGESDW QSVASTLKGR TGTQCSNRWK KSLHPTRQRV  540
GRWTRDEDKR LKVAVLLFGP KNWRKIAQVV PGRTQVQCRE RWVNSLDPAL NVGIWTEEED  600
SRLEAAIEEH GYCWSKVATC VASRTDNQCW RRWKTLHPEE VPLLQEARKI RKAALISNFV  660
DRESERPALG PNDFNIQLPM ITATSEPSKE KGKRRRRRPE YEKENAAALR LSPEKRSHKS  720
CRKGAQTTTG RNPPLENNNC TEPAEDVTFQ KKRKREPPSG NNNHIKPAQH VAIQKKRKQP  780
LSGHVNCSDR KQDGAVQTYK RKQQSGSSKF VKSVQDNCSS HLLSALCITG NHEAESFGSS  840
LTVKRRKNHK ASPKQFSKRS MCTESHEEQY SICSEISVFS GGDDGAEVMQ NSGVESEILG  900
ADDTSRKAKP RSKRKTCMNS LTSQSSRTIV AEHFKNLSAA KNTKKNRTKQ QQSKSRKSNK  960
PSGDENGQTD GDHQTLACFL RNKLKKGGCE IVDNACLSEG MDERSKIDQT QFSLQHCDGE  1020
NGTNIEIVDV VNKTVASRDI VREPTKINKE DITLACLCKR LKKKRCVTIA QSSNHGDMSE  1080
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	1e-28	403	627	4	155	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-28	403	627	4	155	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	692	697	KRRRRR
2	943	949	KKNRTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ526620	6e-41	HQ526620.1 Gossypium herbaceum clone NBRI_A_EYI1BW401A8HI1 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440312.1	0.0	PREDICTED: uncharacterized protein LOC105765654 isoform X2
TrEMBL	A0A0D2RPF5	0.0	A0A0D2RPF5_GOSRA; Uncharacterized protein
STRING	Gorai.008G288900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6504	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	myb domain protein 4r1

Link Out ? help Back to Top
Phytozome	Gorai.008G288900.1
Entrez Gene	105765654

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]