PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G285300.1

Common Name

B456_008G285300, LOC105762295

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 362aa MW: 40855.6 Da PI: 8.2647

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G285300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.5	2e-37	120	268	3	135
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec......eaesss 79 k+drhski T+ g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qa ++i +l++t s + ea++ Gorai.008G285300.1 120 SKRDRHSKINTANGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLIQARHEIMKLARTrvshnninS------VaaaaaaEAAAVA 204 69***********************************************************555544431......1222211222222 PP TCP 80 ssasnsssg............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 +s s + +k ++++k +k + +++ la++ r+karara+ rt+ k++ ++k Gorai.008G285300.1 205 KSPS----StsegevvsalegTISKGKPTEKTVKKTTFQFHPLARDLREKARARAKARTKAKNMWNQK 268 2222....123457778888555555557777888888899*****************99988866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.3E-37	120	264	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.277	121	179	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.168	245	262	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MYPSNSNGSS EEPINDHSFF HFVMDSKQED PSFGFFNFPS PYYSQCELEQ VFQDQDHDVF 60 LHQHHDLLFH HEQNHQPLMA DSVSGTIVNV PATSAVDCTK KKSNNHNADT EVKQQKRSSS 120 KRDRHSKINT ANGPRDRRMR LSLDVAREFF GLQDMLGYDK ASRTVEWLLI QARHEIMKLA 180 RTRVSHNNIN SVAAAAAAEA AAVAKSPSST SEGEVVSALE GTISKGKPTE KTVKKTTFQF 240 HPLARDLREK ARARAKARTK AKNMWNQKLC CSTDETKLSS WWSFQTGEES SIQQHHHNKK 300 INPSLQQVAG GDMIDESLAI INKWNPDSMF NCLQNSGINQ EHQITGFLPF GKPWEGYNNK 360 I*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MYPSNSNGSS EEPINDHSFF HFVMDSKQED PSFGFFNFPS PYYSQCELEQ VFQDQDHDVF  60
LHQHHDLLFH HEQNHQPLMA DSVSGTIVNV PATSAVDCTK KKSNNHNADT EVKQQKRSSS  120
KRDRHSKINT ANGPRDRRMR LSLDVAREFF GLQDMLGYDK ASRTVEWLLI QARHEIMKLA  180
RTRVSHNNIN SVAAAAAAEA AAVAKSPSST SEGEVVSALE GTISKGKPTE KTVKKTTFQF  240
HPLARDLREK ARARAKARTK AKNMWNQKLC CSTDETKLSS WWSFQTGEES SIQQHHHNKK  300
INPSLQQVAG GDMIDESLAI INKWNPDSMF NCLQNSGINQ EHQITGFLPF GKPWEGYNNK  360
I*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435620.1	0.0	PREDICTED: transcription factor DICHOTOMA-like
TrEMBL	A0A0D2UBF1	0.0	A0A0D2UBF1_GOSRA; Uncharacterized protein
STRING	Gorai.008G285300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24297	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.2	2e-22	TCP family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G285300.1
Entrez Gene	105762295

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]