PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G282200.1

Common Name

B456_008G282200, LOC105765589

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 825aa MW: 93583.8 Da PI: 7.3909

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G282200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.2	2.4e-09	123	182	17	76
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 ++ + +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e+++++++ Gorai.008G282200.1 123 VQVQPSRGKTRADKDKEVAEFLNKHGINRDAKTAGTKWDNMLGEFRKVYEWERGEKERVG 182 5567789999*******************************************9866555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	2.67E-17	680	814	IPR011009	Protein kinase-like domain
CDD	cd00180	1.68E-13	680	815	No hit	No description
Gene3D	G3DSA:1.10.510.10	3.9E-7	681	816	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence Send to blast
MGDNTIGDGT QKQTVPQQTQ QHFSASSPIE PLECANPKKP RYNSSDKWKQ APMAESTQAR 60 VAAGSSSDTY SSPPHSPTII KPEGDQFQHQ LRKGKYVSPV WKPNEMLWLA RAWRIQYLGG 120 VGVQVQPSRG KTRADKDKEV AEFLNKHGIN RDAKTAGTKW DNMLGEFRKV YEWERGEKER 180 VGKSYFRLSP YERKLHRLPA SFDEEVFEEL AQFMVPRDGR VVGSRALPVP PPVMTTSLLG 240 FDTALDGGLL GHHSPSSSKE LRRIGKIRMT WEESVTLWAE EGEHRRGRVK LQCSSFLNAD 300 ELIFFDDAMV GSTMEAFEDT PLKGFSVDTF VNGQQVKVFG RRKSAQHPFV EPSIRSMPPM 360 EFQDPTDFYM ACLRVPPTTL PSLFELSWHL QEPPPEDYRF PLRRDVYRDI PPGKEVMFTA 420 SSELLDCRAM VYDILGPMIR TNTSLSAASA TGRDSFIGLW DDCINRVVSK FCSVEMVIIR 480 KPSSPSTDQP LQDRWPNVTG FVKNFCLWRG EETDRSREGQ LDPSSTIVEK LLWSYMDLPY 540 ILGYYAVGYM VTFCALSRSE DRVIMTDLYS VDLSFPSERL KALVPCYRIA GLLPLLADRC 600 LNSVLNMQFP FSDFERINLG NGDIIEMTPN TVTRSFLSKK KWAMVKEIYD MLDQRIPHAE 660 FIYRASEIDS TLVFKPRGCK FKPLNYDQLV EALKYVTKAL VALHDLSFMH RDLSWDKVLR 720 RCNGENEWFV TGFDEAVGAP QIYPHPVAST EARGTHAPEM VRGLHGVKVD VWGVGHLVKT 780 CGLTNLPKML RELQSRCLDQ NPDQRPTAAD CYHHLLSASS TATY*

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence Send to blast

MGDNTIGDGT QKQTVPQQTQ QHFSASSPIE PLECANPKKP RYNSSDKWKQ APMAESTQAR  60
VAAGSSSDTY SSPPHSPTII KPEGDQFQHQ LRKGKYVSPV WKPNEMLWLA RAWRIQYLGG  120
VGVQVQPSRG KTRADKDKEV AEFLNKHGIN RDAKTAGTKW DNMLGEFRKV YEWERGEKER  180
VGKSYFRLSP YERKLHRLPA SFDEEVFEEL AQFMVPRDGR VVGSRALPVP PPVMTTSLLG  240
FDTALDGGLL GHHSPSSSKE LRRIGKIRMT WEESVTLWAE EGEHRRGRVK LQCSSFLNAD  300
ELIFFDDAMV GSTMEAFEDT PLKGFSVDTF VNGQQVKVFG RRKSAQHPFV EPSIRSMPPM  360
EFQDPTDFYM ACLRVPPTTL PSLFELSWHL QEPPPEDYRF PLRRDVYRDI PPGKEVMFTA  420
SSELLDCRAM VYDILGPMIR TNTSLSAASA TGRDSFIGLW DDCINRVVSK FCSVEMVIIR  480
KPSSPSTDQP LQDRWPNVTG FVKNFCLWRG EETDRSREGQ LDPSSTIVEK LLWSYMDLPY  540
ILGYYAVGYM VTFCALSRSE DRVIMTDLYS VDLSFPSERL KALVPCYRIA GLLPLLADRC  600
LNSVLNMQFP FSDFERINLG NGDIIEMTPN TVTRSFLSKK KWAMVKEIYD MLDQRIPHAE  660
FIYRASEIDS TLVFKPRGCK FKPLNYDQLV EALKYVTKAL VALHDLSFMH RDLSWDKVLR  720
RCNGENEWFV TGFDEAVGAP QIYPHPVAST EARGTHAPEM VRGLHGVKVD VWGVGHLVKT  780
CGLTNLPKML RELQSRCLDQ NPDQRPTAAD CYHHLLSASS TATY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440232.1	0.0	PREDICTED: uncharacterized protein LOC105765589
TrEMBL	A0A0D2TE92	0.0	A0A0D2TE92_GOSRA; Uncharacterized protein
STRING	Gorai.008G282200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-08	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G282200.1
Entrez Gene	105765589

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]