PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G281100.3
Common NameB456_008G281100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 366aa    MW: 39744.2 Da    PI: 8.6069
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G281100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08110131426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         + C+++ + G C +Gd+C+F H+
  Gorai.008G281100.3 110 KVCNYWVQ-GNCTFGDKCRFLHS 131
                         68******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.842248IPR000571Zinc finger, CCCH-type
SMARTSM003561.12347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7107131IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6108132IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6109131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-7110129IPR000571Zinc finger, CCCH-type
SuperFamilySSF509786.1E-30126334IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.2E-27130334IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.3137176IPR001680WD40 repeat
PROSITE profilePS5029410.812144185IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.344144185IPR001680WD40 repeat
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
SMARTSM00320360216252IPR001680WD40 repeat
SMARTSM003202.1E-4259296IPR001680WD40 repeat
PfamPF004000.026263296IPR001680WD40 repeat
PROSITE profilePS5029411.919266334IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.745266305IPR001680WD40 repeat
SMARTSM003200.51299336IPR001680WD40 repeat
PfamPF004000.26301334IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDLDGGAGNN KRVFNRLGTD TSKNQKVCFH WRAGKCTRFP CSFLHSEPSH PSGSAAASST  60
ANGSGAPKRF ADDSGFSGSA QRRGPNFKNN HNNSWGRMGA NNKVVRKTEK VCNYWVQGNC  120
TFGDKCRFLH SWSLGEGFSM LNHLDGHQKL LSGIVLPAGM DKLFTGSKDE TLRAWDANSG  180
QCTGVINLGG EVGCMISEGL WLFVGIPNAV KAWNTQTNQE FSLSGPAGQV YAMIVGNSLL  240
FAGTQEGILA WKFNAVTNSF EPAASLKGHT LPVVSLMVGA NRLYSGSMDH SIKVWSLETL  300
QCLQTLTEHT NVVMSLLCWD QFLLSCSLDQ TIKVSVSFLF CYFFPSIKAR LFGFTCLFFA  360
GMGGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-151323348319Tako8
6g6n_A5e-151323348319Tako8
6g6n_B5e-151323348319Tako8
6g6n_C5e-151323348319Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145871e-150JX614587.1 Gossypium hirsutum clone NBRI_GE58084 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440218.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like isoform X2
SwissprotQ9FNZ21e-158C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0D2UB580.0A0A0D2UB58_GOSRA; Uncharacterized protein
STRINGGorai.008G281100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.21e-146C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]