PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G281100.1
Common NameB456_008G281100, LOC105765577
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 442aa    MW: 48148.5 Da    PI: 7.8456
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G281100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08110131426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         + C+++ + G C +Gd+C+F H+
  Gorai.008G281100.1 110 KVCNYWVQ-GNCTFGDKCRFLHS 131
                         68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.842248IPR000571Zinc finger, CCCH-type
SMARTSM003561.12347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7107131IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6108132IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-6109131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-7110127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.108.1E-10128246IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.37E-35129222IPR017986WD40-repeat-containing domain
SMARTSM003201.3137176IPR001680WD40 repeat
PROSITE profilePS5029410.812144185IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.344144185IPR001680WD40 repeat
PRINTSPR003201.5E-5163177IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
Gene3DG3DSA:2.130.10.102.3E-24261434IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.1E-4270307IPR001680WD40 repeat
PfamPF004000.034274307IPR001680WD40 repeat
SuperFamilySSF509781.37E-35276434IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.745277316IPR001680WD40 repeat
PROSITE profilePS5029415.821277356IPR017986WD40-repeat-containing domain
PRINTSPR003201.5E-5294308IPR020472G-protein beta WD-40 repeat
SMARTSM003200.001310347IPR001680WD40 repeat
PfamPF004000.0048312346IPR001680WD40 repeat
PRINTSPR003201.5E-5334348IPR020472G-protein beta WD-40 repeat
SMARTSM0032053351394IPR001680WD40 repeat
SMARTSM0032090397433IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDLDGGAGNN KRVFNRLGTD TSKNQKVCFH WRAGKCTRFP CSFLHSEPSH PSGSAAASST  60
ANGSGAPKRF ADDSGFSGSA QRRGPNFKNN HNNSWGRMGA NNKVVRKTEK VCNYWVQGNC  120
TFGDKCRFLH SWSLGEGFSM LNHLDGHQKL LSGIVLPAGM DKLFTGSKDE TLRAWDANSG  180
QCTGVINLGG EVGCMISEGL WLFVGIPNAV KAWNTQTNQE FSLSGPAGQV YAMIVGNSLL  240
FAGTQGQSPS IIGFLQEGIL AWKFNAVTNS FEPAASLKGH TLPVVSLMVG ANRLYSGSMD  300
HSIKVWSLET LQCLQTLTEH TNVVMSLLCW DQFLLSCSLD QTIKVWVATE NGNLEVTYTH  360
NEEHGLLNLR GMHDLESKPV LLCACNDNYV RLYDLPSFSE RGKIFAKQEI RAIEVGPSGL  420
FFTGDGTGFK VWKWAEPVAT T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-151324328323Tako8
6g6n_A2e-151324328323Tako8
6g6n_B2e-151324328323Tako8
6g6n_C2e-151324328323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145871e-150JX614587.1 Gossypium hirsutum clone NBRI_GE58084 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440217.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X1
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0D2TE790.0A0A0D2TE79_GOSRA; Uncharacterized protein
STRINGGorai.008G281100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]