PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G280400.1 | ||||||||
Common Name | B456_008G280400, LOC105762554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 138aa MW: 15547.8 Da PI: 9.0105 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.8e-39 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaC++lrr+C++ C+++pyfp ++p++f +h+++Gasnv kll++lp + r++a++sl+ eA+ r++dPvyG+vg+i+ lqqq++ ++ Gorai.008G280400.1 5 RCAACRYLRRRCPPACIFSPYFPPNNPQRFVSIHRIYGASNVAKLLQQLPSHLRTQAADSLYLEAQYRIEDPVYGCVGLISLLQQQIHDVE 95 6****************************************************************************************** PP DUF260 92 aelallkee 100 +la++++e Gorai.008G280400.1 96 RQLAMTQAE 104 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.292 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-39 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MNPGRCAACR YLRRRCPPAC IFSPYFPPNN PQRFVSIHRI YGASNVAKLL QQLPSHLRTQ 60 AADSLYLEAQ YRIEDPVYGC VGLISLLQQQ IHDVERQLAM TQAEIAFRAR HPQAVESNLL 120 NNVGNPSFSN QASSWFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-40 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-40 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435764.1 | 2e-98 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 1e-50 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A0D2RNU9 | 5e-97 | A0A0D2RNU9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G280400.1 | 8e-98 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 7e-40 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G280400.1 |
Entrez Gene | 105762554 |
Publications ? help Back to Top | |||
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