PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G267000.1
Common NameB456_008G267000, LOC105765430
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 218aa    MW: 24074.6 Da    PI: 6.9331
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G267000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-393291362
              zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                        e++l+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss
  Gorai.008G267000.1 32 EANLNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTHGGSLRNVPVGGGSRKNKTSS 91
                        56799****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-272388IPR003851Zinc finger, Dof-type
PfamPF027015.8E-343489IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1893589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEATQWEQGI GVTKPMAIGE YSRSSARVQK GEANLNCPRC NSTNTKFCYY NNYSLSQPRY  60
FCKTCRRYWT HGGSLRNVPV GGGSRKNKTS SSKKLDDDHL THQNPKIHEG DHHQVINLAY  120
PPVVPAQAYN SSQRLPFMPE IGGASTGIYS SGFPVLDPGL KFSSDGFGTG YDENHQGVEE  180
NGERLLLPVK EESKQVPVNT MNELDEDKEQ GESTGHC*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
UniprotTISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439964.11e-164PREDICTED: dof zinc finger protein DOF3.7-like
SwissprotQ433854e-34DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A0D2UAC21e-163A0A0D2UAC2_GOSRA; Uncharacterized protein
STRINGGorai.008G267000.11e-163(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1964367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.12e-36Dof family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]