PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G265600.1
Common NameB456_008G265600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 496aa    MW: 53426.8 Da    PI: 7.7499
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G265600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.33.2e-24158200244
                 WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          epgrCrRtDGKkWRCsr++ +++k+CErHlhrgr rsrk++e
  Gorai.008G265600.1 158 VEPGRCRRTDGKKWRCSRDAAPDQKYCERHLHRGRPRSRKPVE 200
                         59**************************************987 PP
2QLQ27.41e-10102133233
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 
                         +FT +Q  +L +Q++++Ky+ a+  vP +Ll 
  Gorai.008G265600.1 102 PFTFSQYKELQRQVMIFKYMKASIAVPLDLLI 133
                         8**************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009510.0036101137IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166615.156102137IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.6E-7102134IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.604157201IPR014977WRC domain
PfamPF088792.2E-20159200IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MMMANCDNHH HRSFPSYVVG YGDVDADDGP TGNNNNRPKT SNIYDVLASS DSSSGFAATV  60
ASGGAVGVRI LQQPFDISPT STTTAHTAFK SPGGMAASLE FPFTFSQYKE LQRQVMIFKY  120
MKASIAVPLD LLIPTIGSPS VSVASYSAMA RFSGRADVEP GRCRRTDGKK WRCSRDAAPD  180
QKYCERHLHR GRPRSRKPVE LPNKKTRHTL SQAHPSSSST TRPQFVAQPL NQNQTTCFLG  240
QPSDKAAPFW PFTSVSFYKE TRTSDWDMNE LIPLADQQWH HLMQIGTATE GSLFNAVNQS  300
YGKEPLNLIS CPNFGPAEDQ QRNTSPWLLN PEIVPVEKSP PRGFIDAWST AVSDDHLANT  360
GTETSVNGKL TLSSLSLSMG INSFRDNETG PIRMGLGVCE YDQENHEYAS KCHLSSWLAP  420
GSTPGGPLAE VLRPSATASS PVAGNGNSCS PAMTAVSSPS GVLQKALASW SDSSGSSSPT  480
IVCSRAKPEI GLMLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7355320.0EU735532.1 Gossypium arboreum small heat shock protein gene, promoter region and partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737257.10.0PREDICTED: growth-regulating factor 7-like isoform X1
TrEMBLA0A0D2RMW50.0A0A0D2RMW5_GOSRA; Uncharacterized protein
STRINGGorai.008G265600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121062731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.11e-33growth-regulating factor 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]