PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G262400.2

Common Name

B456_008G262400, LOC105765386

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 696aa MW: 74600.6 Da PI: 8.4266

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G262400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.2	3.1e-30	93	177	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ k+plWe+vs+k++e g++rs+k+C+ek+en++k+yk++ke++ +r++++s +++f+qlea Gorai.008G262400.2 93 RWPRQETLALLKIRSDMDATFRDATVKGPLWEDVSRKLAELGYKRSAKKCREKFENVHKYYKRTKETRAGRQDGKS--YKFFSQLEA 177 8*******************************************************************866665..*****85 PP
2	trihelix	110.1	1.4e-34	532	617	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a Gorai.008G262400.2 532 RWPKTEVLALINLRSGLESRYQEAGPKGPLWEEISAGMSRLGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 617 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0048	90	152	IPR001005	SANT/Myb domain
Pfam	PF13837	6.2E-21	92	178	No hit	No description
PROSITE profile	PS50090	6.667	92	150	IPR017877	Myb-like domain
CDD	cd12203	2.50E-28	92	157	No hit	No description
SMART	SM00717	0.035	529	591	IPR001005	SANT/Myb domain
Pfam	PF13837	1.3E-23	531	618	No hit	No description
PROSITE profile	PS50090	6.76	531	589	IPR017877	Myb-like domain
CDD	cd12203	4.30E-32	531	596	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence Send to blast
MQQEGGGGGG GGGGGGQQSQ YGEMTTGPPT TGAVSEASEQ LVEAASPISS RPPAGNLDEF 60 MRLASVGGGD ELGLGDRHGS GGGGGAGVAS GNRWPRQETL ALLKIRSDMD ATFRDATVKG 120 PLWEDVSRKL AELGYKRSAK KCREKFENVH KYYKRTKETR AGRQDGKSYK FFSQLEALQT 180 TSGAAPANVS IPVIPATVAV TATSLDVAPV SVGIPMPISS AARIVPPTTA VPMSSSSFLA 240 MPGSALAPVP VAVPEPATAP APAPPAATTA APFGISFSSN SSTFSQGFDD DEEDEDEVGV 300 GGEPSSMAGT SRKRKRSSSR GGGGSSTRRM MEFFEGLMKQ VMQKQEAMQQ RFLEAMEKRE 360 QDRTIREEAW KRQEMARLTR EHELMAQERA IAASRDAAIV SFLQKITGQT IQLPTTATVI 420 VPAAPPPPPP TQPTVSVVPP EVPIAPPSHQ TPTLPQQKQQ EQQQTHISHH QPPPPQQQPQ 480 VVQQQQQLQH MELVRHQQQP ITTEIVMAIP EQQVPPQEIG GSGSLAEPAS SRWPKTEVLA 540 LINLRSGLES RYQEAGPKGP LWEEISAGMS RLGYKRSAKR CKEKWENINK YFKKVKESNK 600 KRPEDAKTCP YFHQLDALYR KKILGGGTSS GSFSDHNRPD EETSRQHHDP TLSTAAPQPS 660 QNESGATADV VTSKEGLPSH PFGEGYGGAA KKEVP*

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence Send to blast

MQQEGGGGGG GGGGGGQQSQ YGEMTTGPPT TGAVSEASEQ LVEAASPISS RPPAGNLDEF  60
MRLASVGGGD ELGLGDRHGS GGGGGAGVAS GNRWPRQETL ALLKIRSDMD ATFRDATVKG  120
PLWEDVSRKL AELGYKRSAK KCREKFENVH KYYKRTKETR AGRQDGKSYK FFSQLEALQT  180
TSGAAPANVS IPVIPATVAV TATSLDVAPV SVGIPMPISS AARIVPPTTA VPMSSSSFLA  240
MPGSALAPVP VAVPEPATAP APAPPAATTA APFGISFSSN SSTFSQGFDD DEEDEDEVGV  300
GGEPSSMAGT SRKRKRSSSR GGGGSSTRRM MEFFEGLMKQ VMQKQEAMQQ RFLEAMEKRE  360
QDRTIREEAW KRQEMARLTR EHELMAQERA IAASRDAAIV SFLQKITGQT IQLPTTATVI  420
VPAAPPPPPP TQPTVSVVPP EVPIAPPSHQ TPTLPQQKQQ EQQQTHISHH QPPPPQQQPQ  480
VVQQQQQLQH MELVRHQQQP ITTEIVMAIP EQQVPPQEIG GSGSLAEPAS SRWPKTEVLA  540
LINLRSGLES RYQEAGPKGP LWEEISAGMS RLGYKRSAKR CKEKWENINK YFKKVKESNK  600
KRPEDAKTCP YFHQLDALYR KKILGGGTSS GSFSDHNRPD EETSRQHHDP TLSTAAPQPS  660
QNESGATADV VTSKEGLPSH PFGEGYGGAA KKEVP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439902.1	0.0	PREDICTED: trihelix transcription factor GTL1-like isoform X2
Swissprot	Q39117	3e-72	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A0D2TD12	0.0	A0A0D2TD12_GOSRA; Uncharacterized protein
STRING	Gorai.008G262400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	4e-57	GT-2-like 1

Link Out ? help Back to Top
Phytozome	Gorai.008G262400.2
Entrez Gene	105765386

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]