PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G261400.3 | ||||||||
Common Name | B456_008G261400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 722aa MW: 79886.9 Da PI: 4.7548 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.7 | 5.4e-54 | 9 | 135 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd Gorai.008G261400.3 9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-EVIPEIDVCKWEPWDLPglSVIKSDDLEWFFFCPRDRKYPNGHRSNRATDKGYWKATGKD 98 699************************999.99***************6447778888********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++++s k++l+g+kktLvfykgrapkge+t+W+mheyr Gorai.008G261400.3 99 RTIKS-KKSLIGMKKTLVFYKGRAPKGERTNWIMHEYR 135 *****.899****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-62 | 5 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.838 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MEVLTMGTLP LGFRFRPTDE ELINHYLRLK INGRHSEVEV IPEIDVCKWE PWDLPGLSVI 60 KSDDLEWFFF CPRDRKYPNG HRSNRATDKG YWKATGKDRT IKSKKSLIGM KKTLVFYKGR 120 APKGERTNWI MHEYRPTTKE LDGTAPGQSA FVLCRLFHKV EGRNDIVKYD EVEQTGYSPA 180 MIKSSPDDTS SDLLQDTVSS DTQAQKPDNL MQNDQITGDT SSCNSHMTSN ADYHATEETM 240 MEKYPLPGSN SNLYEPNYGE IDSKVFSPLM NSQLFEDLPF FVDSPYANDF GHDQNGFHFQ 300 DGTSEQDVSF AFLDDILSNH YDSCEESNTQ KNLVDGTEMP LFGDSFISKT PPPEISYLKE 360 NGRPADTDTE MPQLQFGTEV GARRWLGGPI DNNQSLQMQT SFQPTHTQPA LYNQEYRTRN 420 IGGLGNYSVG QVTFTDSAMG NINNLQQLTS LKNYVNSGGD LGGGIGMKTG TCQPLKQSNS 480 ENFGTLGTGI KIRTRGSQQQ PNSDIVNQGT APRRIRLMKL SSGPMKGSVG CVDDEKMMST 540 CLVEEEEVQS ALTEVTEAEA AGQTSSSDES EKNIVNQAIA PRRIRLQLST GPMNGSAGCV 600 DGGNMTSPGL GKEEVQSALT EATEDEATGQ ISSSCETSSS DESEVENRFL KFEGSRDADE 660 SYSKPRLRVK QVDEQHSCSQ KGPSLHLKAA PALHRPNSLL VPGIAIFTIT LLFALFMGIW 720 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-46 | 9 | 159 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439882.1 | 0.0 | PREDICTED: protein NTM1-like 9 isoform X5 | ||||
TrEMBL | A0A0D2TCZ1 | 0.0 | A0A0D2TCZ1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G261400.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 1e-139 | NAC 014 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G261400.3 |
Publications ? help Back to Top | |||
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