PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G258900.1
Common NameB456_008G258900, LOC105765350
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 326aa    MW: 37541.1 Da    PI: 6.8362
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G258900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.2e-19123177256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         r++++f++eq++ Le +Fe+++ p    +++LA++lgL+ rq+ +WFqNrRa+ k
  Gorai.008G258900.1 123 RNKRRFSDEQIRSLEVMFESDSRPESLIKQQLANELGLQPRQIAIWFQNRRARSK 177
                         67889************************************************98 PP
2HD-ZIP_I/II112.52.7e-36124215293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         +krr+s+eq+++LE +Fe++++ e+  K++la+eLglqprq+a+WFqnrRAR k+kq+E+dy++Lk++ydal+++ e+L++e+++Lr +l+
  Gorai.008G258900.1 124 NKRRFSDEQIRSLEVMFESDSRPESLIKQQLANELGLQPRQIAIWFQNRRARSKAKQIERDYNVLKESYDALSSSYESLKRENQALRIQLQ 214
                         79*************************************************************************************9998 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Gorai.008G258900.1 215 K 215
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.22E-18106180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-18113177IPR009057Homeodomain-like
PROSITE profilePS5007118.236119179IPR001356Homeobox domain
SMARTSM003895.3E-18122183IPR001356Homeobox domain
PfamPF000461.0E-16123177IPR001356Homeobox domain
CDDcd000861.78E-15123180No hitNo description
PRINTSPR000316.2E-5150159IPR000047Helix-turn-helix motif
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
PRINTSPR000316.2E-5159175IPR000047Helix-turn-helix motif
PfamPF021831.0E-17179220IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MANPCHLREK STRVSNRFPI KHQQEVFSPS KPASDQVQAH PSDTLSTTYR HIVSESYIMF  60
IYTLALLHLS LLHTLCPVII YHTMLANKEQ LHTAAVKMEL GLSGLDHLDM RHHPITNIKS  120
SNRNKRRFSD EQIRSLEVMF ESDSRPESLI KQQLANELGL QPRQIAIWFQ NRRARSKAKQ  180
IERDYNVLKE SYDALSSSYE SLKRENQALR IQLQKLKGQL EMEHENQQHC GPNRADENSG  240
NAKPENGSTI LDTNEKVTIL FEGYDRLLPC DDNSRNVESK DGDRVALDMI EATNGSLTSS  300
EKWCRFESNC FLDESSCSSN WWEYW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171179RRARSKAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431100.0AC243110.1 Gossypium raimondii clone GR__Ba0028M03-hoi, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439840.10.0PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A0D2TCT90.0A0A0D2TCT9_GOSRA; Uncharacterized protein
STRINGGorai.008G258900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1805779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-41homeobox 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]