PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.008G256800.4 | ||||||||
Common Name | B456_008G256800, LOC105765332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 288aa MW: 31477.2 Da PI: 8.646 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.9 | 1.2e-39 | 37 | 97 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ss Gorai.008G256800.4 37 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSS 97 7899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-29 | 30 | 95 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-33 | 39 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.134 | 41 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 43 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MDTAQWPQEI VVKPIEEIVT NTCPKPTGLE RKIRPQKEQA LNCPRCNSTN TKFCYYNNYS 60 LTQPRYFCKT CRRYWTEGGS LRNIPVGGGS RKNKRSSTSS SSSISTSLTS SKKLPGLVTP 120 PSLSQCSTQN PKIHDGQDLN LAFPTASQGY RSLSELVQVP LENNNKNQIP SSSSSSPTTS 180 QLSALELLTG ITSRGFNSFI PMPVPDPNTV YTPGNFPMQD FKPTLNFSLD GLGNGYGSLH 240 GVQETTGRLL FPFEDLKQVS TTTDIDQHKD QGDSTGYWTG MLGGGSW* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}. | |||||
Uniprot | TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC243101 | 0.0 | AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439815.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6 isoform X1 | ||||
Swissprot | Q8LAP8 | 5e-72 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A0D2U9N9 | 0.0 | A0A0D2U9N9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G256800.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24060.1 | 5e-68 | Dof family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.008G256800.4 |
Entrez Gene | 105765332 |
Publications ? help Back to Top | |||
---|---|---|---|
|