PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G253900.1
Common NameB456_008G253900, LOC105765298
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 304aa    MW: 33293.4 Da    PI: 9.0613
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G253900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-19106156256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr++  +g+WvAeIr p +   r r++lg++ t+e Aa a+++a+ kl+ge
  Gorai.008G253900.1 106 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYETPETAAYAYDRAAYKLRGE 156
                         59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-21105165No hitNo description
SMARTSM003807.5E-35106169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-30106164IPR001471AP2/ERF domain
PROSITE profilePS5103223.051106163IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-22106163IPR016177DNA-binding domain
PfamPF008476.9E-13107156IPR001471AP2/ERF domain
PRINTSPR003671.4E-12107118IPR001471AP2/ERF domain
PRINTSPR003671.4E-12145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MQEINHPFGF NDGADIGNSV SQLILSGGSN TLDSIFSRCE PSIAAVGTNS VYEPLGSSVY  60
LRQRDLLLKF CQGNASFSRN SVADQLRNSQ NTASTSNCVS PQKTKLYRGV RQRQWGKWVA  120
EIRLPQNRVR VWLGTYETPE TAAYAYDRAA YKLRGEYARL NFPNLKDPAK SGLGDCARLN  180
ALKNAVDAKI QAICQKVKRE RAKKNAKKGN SDRPAASPEA KNDVKVIEPC TSSSSLAFSD  240
NLSNGLLSPP RVSEDGFRRC MNSPSSVSND STMMMAGEPN FEDCSLARMP SFDADLLWET  300
LAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-20103163263ATERF1
3gcc_A7e-20103163263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5816260.0JX581626.1 Gossypium hirsutum clone NBRI_GE14296 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439765.10.0PREDICTED: ethylene-responsive transcription factor ERF061
TrEMBLA0A0D2TCL50.0A0A0D2TCL5_GOSRA; Uncharacterized protein
STRINGGorai.008G253900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.15e-65ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]