PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G253300.1 | ||||||||
Common Name | B456_008G253300, LOC105765294 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 356aa MW: 39830.1 Da PI: 5.222 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.3 | 7.5e-29 | 131 | 190 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs+edp+++eitY+g+H++ Gorai.008G253300.1 131 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhtqDCWATKQVQRSDEDPTIFEITYRGTHTC 190 8**************************998899*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.2E-28 | 124 | 190 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.631 | 125 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-25 | 129 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-39 | 130 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 131 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MEHRGNREQG TLISELIQGM ELAKQLRVHL DTASSAESMD LLVQKILSSY EKALLILQFS 60 RPMSMGQPQQ NVGATSGVPE SPLSINGSPR SDDLDKDNQD TRDVSKKRKM LPRWTDHVRV 120 TSENLLEGTH DDGYSWRKYG QKDILGAKYP RSYYRCTYRH TQDCWATKQV QRSDEDPTIF 180 EITYRGTHTC VHGNQPVPPP ASPEKQEYKL TNLNTNNNQQ LQSQDILSNL RKGLTVNTEM 240 ATSFSFPSTS FGWLKTENHS FSPSGVLDNN NILNSFSSPF TSPATPELNY FSASQPQMNS 300 VGGMLSTQNS EPDLKELISA NTSATNSPII DLDFSLDQLE LDPNFQFDAQ GFFSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 8e-20 | 131 | 190 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669778 | 0.0 | KF669778.1 Gossypium hirsutum WRKY transcription factor 60 (WRKY60) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439758.1 | 0.0 | PREDICTED: probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 2e-67 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | A0A0D2TCI6 | 0.0 | A0A0D2TCI6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G253300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 2e-69 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G253300.1 |
Entrez Gene | 105765294 |