PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G252300.1
Common NameB456_008G252300, LOC105765286
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 344aa    MW: 38226.3 Da    PI: 5.0001
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G252300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19126176155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Gorai.008G252300.1 126 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 176
                         59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-32126183No hitNo description
PROSITE profilePS5103223.578127184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-30127184IPR001471AP2/ERF domain
SMARTSM003801.6E-38127190IPR001471AP2/ERF domain
PfamPF008472.1E-12127176IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21127184IPR016177DNA-binding domain
PRINTSPR003673.7E-10128139IPR001471AP2/ERF domain
PRINTSPR003673.7E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDTCPVPSIK YAEHRNETKL FSPLLNVRLE NQPEMKPRIV RITVTDADAT DSSSDEEHQQ  60
KRTRVSSRNR VKKFVKEITI ESSCPTEKNI VERSKTTSSL SKASRKRPAA VAEAKGKAPA  120
KAPAGKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMVYDNA AIQLRGPDAL  180
TNFTTPQQKS IQEKTSQKPL SNSDYNSDEE SHKTDPCSPT SVLRCHSLSV DEADSQSAKE  240
SREIGSEARD VVDDSCCLSG ENLSGFSDYS SLFSGDMFCS VPDFFDDDTS LHESFLKDEF  300
GDGFLSTCGD FEFGFGDFSS FQRVDDHFQD IGDLFGSDPL LAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20125183362ATERF1
3gcc_A2e-20125183362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439752.10.0PREDICTED: ethylene-responsive transcription factor CRF1
TrEMBLA0A0D2T6R30.0A0A0D2T6R3_GOSRA; Uncharacterized protein
STRINGGorai.008G252300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-53cytokinin response factor 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]