PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G244400.1
Common NameB456_008G244400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 312aa    MW: 34801.1 Da    PI: 5.8902
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G244400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.4e-36211122102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y++++d+++++lisw+e+g++f+v+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++  F++g+ke
  Gorai.008G244400.1  21 FLAKTYQLVDDPSVDDLISWNEDGSAFIVWHPAEFARDLLPRYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANACFRRGEKE 102
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Gorai.008G244400.1 103 LLRDIHRRKI 112
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3810104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.5E-5817110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.27E-3518110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-212144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-215971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-217284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MACGSTASAA ADSQRSLPTP FLAKTYQLVD DPSVDDLISW NEDGSAFIVW HPAEFARDLL  60
PRYFKHNNFS SFVRQLNTYG FRKIVPDRWE FANACFRRGE KELLRDIHRR KISPPAATPA  120
TVTVAVVPCE VSPTNSGDEQ VISSHSPPVA TILHRMTSCT TTPELLEENE RLRRENMQLS  180
QELTQLKGLC NNILTLMTNH ASGQLESHSI LAEGKALDLL SARDSARSTE DSGSKEVAEE  240
EDVTPKLFGV SIGVKRLRKE GEDEMQNSFQ VRQQDTEPAS KMKEEPWMGK VMIKNRGSWS  300
LVNDQTTHNA I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-262111320123Heat shock factor protein 1
5d5u_B3e-262111029129Heat shock factor protein 1
5d5v_B3e-262111029129Heat shock factor protein 1
5d5v_D3e-262111029129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674070.0KR067407.1 Gossypium hirsutum HSF26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737011.10.0PREDICTED: heat stress transcription factor B-2b-like isoform X1
SwissprotQ9T0D34e-98HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A0D2TC180.0A0A0D2TC18_GOSRA; Uncharacterized protein
STRINGGorai.008G244400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-89HSF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]