PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G243000.1 | ||||||||
Common Name | B456_008G243000, LOC105765183 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 389aa MW: 41371.5 Da PI: 8.7407 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.6 | 2.7e-35 | 86 | 188 | 2 | 95 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssas 83 ++k++ ++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ ++++ + s++ Gorai.008G243000.1 86 TAKRSYNKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEHAIIEATGTGTVPAIAVsvggtlkipTTSATNTSNN 176 678999**********************************************************666663333333322111111111222 PP TCP 84 nsssgkaaksaa 95 ns+++++ k+ + Gorai.008G243000.1 177 NSQIDDKTKKRK 188 222221111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 26.436 | 92 | 146 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.4E-29 | 92 | 187 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MDPSEDGGTS DLSTSTGGPN NATPTAANSI KNDENCENSA LMVMPLKEEP IEPDPDRKTH 60 PPRPTRVVPV SGQMSMQIPI PTPVTTAKRS YNKDRHTKVE GRGRRIRIPA TCAARIFQLT 120 RELGHKSDGE TVRWLLEHAE HAIIEATGTG TVPAIAVSVG GTLKIPTTSA TNTSNNNSQI 180 DDKTKKRKRP ASSEFCDVND GIPIAVAQQQ QQQQRLVTQY SGLAPVAQQA LVPVWAVGNT 240 GMMVPANAFW MIPQSTPTAS GDWLTNQRPP PQLWAFSPAL TSVCNIAARP TSSFVATTTE 300 TQAVVCDGVS TLAVSTSSTP VGATEAKKST MAPSVSSGGN GGGGTGGTAQ MLRDFSLEIY 360 DKQELQLMGR SWNHHQQQIK AASKQKNP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527225 | 1e-169 | HQ527225.1 Gossypium herbaceum clone NBRI_B_2245 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439606.1 | 0.0 | PREDICTED: transcription factor TCP19-like | ||||
Swissprot | O64647 | 2e-59 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A0D2Q135 | 0.0 | A0A0D2Q135_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G243000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17337 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 3e-58 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G243000.1 |
Entrez Gene | 105765183 |
Publications ? help Back to Top | |||
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