PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G238800.1
Common NameB456_008G238800, LOC105765142
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 264aa    MW: 29504.8 Da    PI: 5.0351
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G238800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l++ +   G  +W++ ++  g++R++k+c++rw +yl
  Gorai.008G238800.1 14 KGPWTAEEDQKLINFILTNGQCCWRALPKLAGLRRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding52.31.3e-1670111447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  Gorai.008G238800.1  70 LSEAEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                         5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-20563IPR009057Homeodomain-like
PROSITE profilePS5129413.764961IPR017930Myb domain
SuperFamilySSF466891.1E-2611108IPR009057Homeodomain-like
SMARTSM007172.9E-121363IPR001005SANT/Myb domain
PfamPF002496.1E-141461IPR001005SANT/Myb domain
CDDcd001678.38E-91661No hitNo description
PROSITE profilePS5129427.32162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-2564117IPR009057Homeodomain-like
SMARTSM007175.5E-1566114IPR001005SANT/Myb domain
PfamPF002495.7E-1570111IPR001005SANT/Myb domain
CDDcd001671.20E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDQKLINFIL TNGQCCWRAL PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SEAEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLVKMG  120
IDPVTHEPLN KQSKTEQSPS HGHNSADNHI TENDGTAANS SEDNSSTTPT ENCSTTDDSI  180
LLDSICNDES LLTSLWLDEP PLADDSWNST VPAAETCNDQ TSLPSWEDSI AWLLDCQDFG  240
IHDFGFDCLN DNELNTTNTY AKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439547.10.0PREDICTED: protein ODORANT1-like
RefseqXP_012439548.10.0PREDICTED: protein ODORANT1-like
RefseqXP_016736944.10.0PREDICTED: protein ODORANT1-like
RefseqXP_016736945.10.0PREDICTED: protein ODORANT1-like
SwissprotQ50EX61e-106ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0D2T5S60.0A0A0D2T5S6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NGK90.0A0A1U8NGK9_GOSHI; protein ODORANT1-like
TrEMBLA0A2P5QQM90.0A0A2P5QQM9_GOSBA; Uncharacterized protein
STRINGGorai.008G238800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.11e-107myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]