PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G236500.9
Common NameB456_008G236500, LOC105765116
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 140aa    MW: 15427.8 Da    PI: 8.1469
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G236500.9genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY135.95e-42101392134
               YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 
                         d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      a + hl +++  + ++ l+  ++       ++ ++
  Gorai.008G236500.9  10 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSANQFHLPHNFFTPSHNLLEEISNPSPNILLNQGNT 100
                         57789*******************************************9999999999999999998886555544444333333444433 PP

               YABBY  93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134
                         s   +    ++   +e+pr+p ++rPPekrqrvPsaynrfik
  Gorai.008G236500.9 101 SDI-TLP--TRGVADELPRPPVINRPPEKRQRVPSAYNRFIK 139
                         333.222..3567889***999*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.4E-4114139IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MSSSSTLSLD HLPPSEQLCY VHCNICDTVL AVSVPCTSLF KTVTVRCGHC TNLLPVNMRG  60
LLMPSANQFH LPHNFFTPSH NLLEEISNPS PNILLNQGNT SDITLPTRGV ADELPRPPVI  120
NRPPEKRQRV PSAYNRFIK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Preferentially expressed in immature organs containing meristems and organ primordia. Expressed in phloem of developing vascular tissues of young seedling shoots. Expressed in the phloem of midvein vasculature of young leaves. Does not show polar expression pattern in leaf primordia. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17676337}.
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165332e-82JX616533.1 Gossypium hirsutum clone NBRI_GE61273 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439507.11e-97PREDICTED: axial regulator YABBY 1-like isoform X1
RefseqXP_012439508.11e-97PREDICTED: axial regulator YABBY 1-like isoform X1
SwissprotA2X7Q36e-40YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6686e-40YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A0D2RFX61e-96A0A0D2RFX6_GOSRA; Uncharacterized protein
TrEMBLA0A0D2T6N13e-96A0A0D2T6N1_GOSRA; Uncharacterized protein
TrEMBLA0A2P5R6J23e-96A0A2P5R6J2_GOSBA; Uncharacterized protein
STRINGGorai.008G236500.15e-97(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-42YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]