PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G236500.6 | ||||||||
Common Name | B456_008G236500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | YABBY | ||||||||
Protein Properties | Length: 172aa MW: 18946.7 Da PI: 8.3955 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 196.1 | 1.6e-60 | 10 | 164 | 2 | 159 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 d+ seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++ a + hl +++ + ++ l+ ++ ++ ++ Gorai.008G236500.6 10 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSANQFHLPHNFFTPSHNLLEEISNPSPNILLNQGNT 100 577899******************************************9999999999999999998886555544444333333444433 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 s + ++ +e+pr+p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaakn Gorai.008G236500.6 101 SDI-TLP--TRGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKN 164 333.222..3567889***999********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-60 | 14 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.89E-6 | 119 | 163 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 0.0014 | 129 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSSSSTLSLD HLPPSEQLCY VHCNICDTVL AVSVPCTSLF KTVTVRCGHC TNLLPVNMRG 60 LLMPSANQFH LPHNFFTPSH NLLEEISNPS PNILLNQGNT SDITLPTRGV ADELPRPPVI 120 NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DITHREAFSA AAKNVRSKTP D* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Preferentially expressed in immature organs containing meristems and organ primordia. Expressed in phloem of developing vascular tissues of young seedling shoots. Expressed in the phloem of midvein vasculature of young leaves. Does not show polar expression pattern in leaf primordia. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17676337}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439513.1 | 1e-118 | PREDICTED: protein YABBY 4-like isoform X4 | ||||
Swissprot | A2X7Q3 | 4e-59 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 4e-59 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A0D2RFX6 | 1e-122 | A0A0D2RFX6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G236500.1 | 1e-117 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-60 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G236500.6 |
Publications ? help Back to Top | |||
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