PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G232600.1
Common NameB456_008G232600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 282aa    MW: 31047.5 Da    PI: 8.8089
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G232600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20141191255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ kl+g
  Gorai.008G232600.1 141 HYRGVRQRP-WGKFAAEIRDP---NrRGSRIWLGTFDTAIEAAKAYDRAAFKLRG 191
                         8********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-32140200IPR001471AP2/ERF domain
CDDcd000183.15E-32140199No hitNo description
PROSITE profilePS5103224.223141199IPR001471AP2/ERF domain
PfamPF008471.7E-14141191IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-23141200IPR016177DNA-binding domain
SMARTSM003804.3E-37141205IPR001471AP2/ERF domain
PRINTSPR003671.1E-13142153IPR001471AP2/ERF domain
PRINTSPR003671.1E-13181201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MESSSEVSSA LQYIEQYLLD ENQFTPAGLG SFSTANQWIN EPIPEVSTSP SQSLCSQTST  60
SGSCLTLSNF NCLDDDDFFN FSPNFPAVKP PTPSSSSSSS HNRKPSLKIS LPHKVEWIQF  120
RKPDSTKAQP TNSNSEDKNK HYRGVRQRPW GKFAAEIRDP NRRGSRIWLG TFDTAIEAAK  180
AYDRAAFKLR GSKAILNFPL EAGKLDVTAV DGERKRSRDD GAGNEKQVKA VKRANDDVTK  240
ARDNGDAPLT PSNWTSFLDN MPLLSPLSPH PPLGFQQVKV I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-30138200264ATERF1
3gcc_A3e-30138200264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7139101e-162KC713910.1 Gossypium hirsutum ethylene-responsive transcription factor 11 (ERF11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636637.10.0PREDICTED: ethylene-responsive transcription factor 5-like
RefseqXP_017636653.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803417e-66EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A0D2T5I90.0A0A0D2T5I9_GOSRA; Uncharacterized protein
STRINGGorai.008G232600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-56ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]