PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G231500.1 | ||||||||
Common Name | B456_008G231500, LOC105765066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 540aa MW: 59876.2 Da PI: 7.2107 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.9 | 4.3e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Gorai.008G231500.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.0E-10 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 5.73E-17 | 6 | 54 | No hit | No description |
Pfam | PF00320 | 7.0E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.3E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 7.7E-12 | 279 | 366 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RVEPDDYEDR 60 RTSRVKNISI KKNKEIKLLK SKANHGTAVV APDYNLGFRK FVDEDSSNRS SSGSAISNSE 120 SCAQFGSADA SDLTGPAQSN VWESMVPSKK RTFVNRPKQS PLEKLTKDLY TILHEQQSSY 180 FSGSSEEDLL LESETPMVSV EIGHGSVLIR HPSSIARDEE SEASSLSVEN KQYSTNEAYS 240 HSSTFPVYSD SKAIKSLGHA IEKAKNPAEQ GMQHEQLKRD KAQNEKSLML ESQKSPLCNI 300 DLNDILNFEE FVKHLTNEEQ QQLLQYLPPL DVAKLPDSLQ SMFESSQFKE NLCYFQQLLA 360 EGVFNISVPG VKAEDCRTLK RLALFNLTKS QWVERRHVLK RCQDSIGAPV VAKGPTATTS 420 NNLVIMKRSR DSQSQNFPEA RTIKCPKRVV MKATCENKEV IDNDGSCFSP RSLFALPPDG 480 SSLLLDSLHF VNESSDQDLL LDVPPNGSFL QAELLHPTLS FGQQASTSSS SARSHHVHP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439433.1 | 0.0 | PREDICTED: GATA transcription factor 26 | ||||
Swissprot | Q8W4H1 | 1e-151 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A0D2T5G4 | 0.0 | A0A0D2T5G4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G231500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-128 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G231500.1 |
Entrez Gene | 105765066 |
Publications ? help Back to Top | |||
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