PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G230600.1

Common Name

B456_008G230600, LOC105765057

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 425aa MW: 47624.5 Da PI: 8.3474

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G230600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.1	9.6e-23	25	113	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wtk+e+laLi+a++e++ +lrrg+lk+ +W++vs+++ ++ g +s++qC++k+e+l+kry+++k+++ k+ + ss++ ++ l+ Gorai.008G230600.1 25 CWTKDETLALIDAYKEKWFALRRGNLKASDWDAVSDVVssaSDPGTVKSSVQCRHKIEKLRKRYRAEKQRSLKNLGKFSSSWDLYPLLD 113 8***********************************998899*************************999*****998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-20	24	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MSTTTSPPLP QPSSATAARR VPPPCWTKDE TLALIDAYKE KWFALRRGNL KASDWDAVSD 60 VVSSASDPGT VKSSVQCRHK IEKLRKRYRA EKQRSLKNLG KFSSSWDLYP LLDSMNFAST 120 SVAGSDDQDH SIDHKVTVFG DFCLKSNKRE NIDGNSGSNL GFDHEFRGGH NSSFNFDHKW 180 QENGGFVAKG IKKFKSDGRI GDGYGSMVDF DHSFGQDVDS LGEFPLKTLG DRSFLNVGFK 240 SKNYGCPNLN YDYDNDSKEY SIDEEMGFRA RDSGAWDSVP QGIHQKKRGR VDMNFEPGGD 300 CRGLNGDASC SRPGLERKNA GAGVKRGVDP VDEMVSSIKL LAEGFVRMEK MKMEMVKEIE 360 KMRMEMEMKH NEMILESQQK IVDAFSSALS EKKKKKKKPS LMFSNMNGNG VEEWQEDAFI 420 KKER*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MSTTTSPPLP QPSSATAARR VPPPCWTKDE TLALIDAYKE KWFALRRGNL KASDWDAVSD  60
VVSSASDPGT VKSSVQCRHK IEKLRKRYRA EKQRSLKNLG KFSSSWDLYP LLDSMNFAST  120
SVAGSDDQDH SIDHKVTVFG DFCLKSNKRE NIDGNSGSNL GFDHEFRGGH NSSFNFDHKW  180
QENGGFVAKG IKKFKSDGRI GDGYGSMVDF DHSFGQDVDS LGEFPLKTLG DRSFLNVGFK  240
SKNYGCPNLN YDYDNDSKEY SIDEEMGFRA RDSGAWDSVP QGIHQKKRGR VDMNFEPGGD  300
CRGLNGDASC SRPGLERKNA GAGVKRGVDP VDEMVSSIKL LAEGFVRMEK MKMEMVKEIE  360
KMRMEMEMKH NEMILESQQK IVDAFSSALS EKKKKKKKPS LMFSNMNGNG VEEWQEDAFI  420
KKER*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	390	398	EKKKKKKKP
2	391	397	KKKKKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439411.1	0.0	PREDICTED: uncharacterized protein LOC105765057
TrEMBL	A0A0D2T5E1	0.0	A0A0D2T5E1_GOSRA; Uncharacterized protein
STRING	Gorai.008G230600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-23	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G230600.1
Entrez Gene	105765057

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]