PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G218300.3
Common NameB456_008G218300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 645aa    MW: 72718.5 Da    PI: 5.8568
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G218300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822164.46.9e-51461872136
              DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspes 92 
                         g+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr++  p+ ++++ g++  +s es
  Gorai.008G218300.3  46 GKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRHSPPPQ-HQQHLGAFPVRSGES 135
                         899******************************************************************665555.*************** PP

              DUF822  93 slq.sslkssalaspvesysaspksssfpspssldsislasa.......asl 136
                         +l+ +sl+++++++ ++ ++++ + ++++sp+slds+ +a+         s+
  Gorai.008G218300.3 136 PLTaTSLQNCSVKATLDCQQPVVRIDDSLSPASLDSVVIAERdtrsekyPST 187
                         ***99**********************************9886554443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.3E-5046196IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.2E-148214639IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.809.4E-158217637IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.6E-73240601IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-48254268IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-48275293IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-48297318IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-48390412IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-48486502IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-48503514IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-48521544IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-48559581IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MESQPQPQPQ PRRPRGFAAT AAAAAASVSP TGTPSGSAGA STASSGKGKR EREKEKERTK  60
LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR EAGWTVEPDG TTYRHSPPPQ  120
HQQHLGAFPV RSGESPLTAT SLQNCSVKAT LDCQQPVVRI DDSLSPASLD SVVIAERDTR  180
SEKYPSTSPI NSVECLEADQ LIQDVHSTEH DNDFTGTQYV PVYVKLSTGV INNFCQLADP  240
DGVRQELSHM NSLNVDGVIV DCWWGIVECW NPQKYVWSGY RELFNYIREF KMKIQVVMAF  300
HEYGRTDSAD VLISLPNWIL EIGKENQDIF FTDREGRRTT EFLSWGIDKE RVLNGRTGVE  360
VYFDFMRSFR TEFDDLFAEG LISAVEIGLG PSGELRYPSF SERMGWRYPG IGEFQRAAKL  420
RGHSFWARGP DNAGHYNSRP HETGFFCERG DYDSYYGRFF LHWYAQALMD HADNVLSLAN  480
LAFEETKIIV KIPAVYWWYK TSSHAAELTA GYYNPTNQDG YSPVFEVLKK HSVTVKFVCY  540
GLQICSYEND EAFADPEGLS WQVLNSVWDR GLKVAGENTL SCYDKEGCLR IIETAKPRND  600
PDRRHFSFFV YQQPSPLVQG VICLPDLDYF IKCMHGDITG DLVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11521859810401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431460.0AC243146.1 Gossypium hirsutum clone MX073K14-jni, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439180.10.0PREDICTED: beta-amylase 8 isoform X3
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0D2PZF30.0A0A0D2PZF3_GOSRA; Beta-amylase
STRINGGorai.008G218300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]