PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G213800.1
Common NameB456_008G213800, LOC105764868
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 359aa    MW: 41433 Da    PI: 8.57
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G213800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06178197626
                         -SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                         C+ f+  G C+ Gd C FaHg
  Gorai.008G213800.1 178 CPAFRN-GKCQKGDACEFAHG 197
                         555655.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-4172198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338172199IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-5178197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5178200IPR000571Zinc finger, CCCH-type
SMARTSM0035628207230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDSDLVRSIH TSYARRMIYY CYTKLMLKIK LFKLLERLIC FDEYEAYRKN QRRRCLRFHR  60
ETVVDKYDYG SKSIISNKEQ QFISSFNLAQ AHAEAEAEAQ AQAQAQAQAQ AQAQALSRYN  120
NALDEAIYGS DEFRMYAYKI KRCTRMRSHD WTECPYAHRG EKAQRRDPRK IPYTAIACPA  180
FRNGKCQKGD ACEFAHGVFE YWLHPVKYRT RACNAGMFCQ RKVCFFAHTP DQLRSDSKFS  240
GPFAHKGRMV MKRGGDHQLM MMMGSPSGSV EGSTSMQAQY VEPSPPPPHQ LEGVSTLLKS  300
LRALKMREDE ERELNNKKNK NKSIKYEDED EDGDGDGDGV EMADMDLPHL DWITELVK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in embryo (at protein level). {ECO:0000269|PubMed:9501112}.
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165950.0JX616595.1 Gossypium hirsutum clone NBRI_GE61372 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439105.10.0PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650366e-72C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A0D2RJK90.0A0A0D2RJK9_GOSRA; Uncharacterized protein
STRINGGorai.008G213800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.13e-69C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]