PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G204400.2

Common Name

B456_008G204400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 377aa MW: 41315.1 Da PI: 4.6862

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G204400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.1	4.1e-10	127	149	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G +CkF+H+ Gorai.008G204400.2 127 ESCAYYMKTGLCKFGYNCKFNHP 149 67********************8 PP
2	zf-CCCH	35.3	1.9e-11	173	196	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C++++rtG Ck+G+ C+F+H+ Gorai.008G204400.2 173 QTECKYYLRTGGCKFGNACRFNHS 196 568********************8 PP
3	zf-CCCH	39.8	7.4e-13	218	242	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Gorai.008G204400.2 218 GEKECPYYMRNGSCKYGANCRFNHP 242 6789********************9 PP
4	zf-CCCH	35.1	2.2e-11	311	335	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r+G+Ck+G+ CkF H++ Gorai.008G204400.2 311 QTICSHYSRYGICKFGPACKFDHSK 335 679********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.99	123	151	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-6	123	151	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.3E-4	123	150	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.4E-8	127	149	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-4	128	148	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	170	198	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-5	170	197	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.06E-6	173	198	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-9	173	196	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-5	176	196	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.004	216	244	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-6	216	243	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-6	218	243	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-10	218	242	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-5	222	241	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.098	308	336	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.1E-5	309	335	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-6	310	337	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-8	311	335	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-5	313	337	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
SQSEETPVPH AMPTDSTSHL GLQSPDPGST SSPDLSPYDL NHSAVETEHE ESSLQQQLQN 60 LDLKEEEVKT DRKDDGERES NNDADGNAAE DEDDENEEER NDNEIDGENV KKSEGKRSHY 120 PVRPDAESCA YYMKTGLCKF GYNCKFNHPI RRTTQAVKEK VKEEVESTEK PSQTECKYYL 180 RTGGCKFGNA CRFNHSTAKS STSPILEFNF LGLPIRQGEK ECPYYMRNGS CKYGANCRFN 240 HPDPTAAGAC DPTSGYGNGG SVSPQAASQV NMLPWSSPRA LNETAAYIPI MFSPPQVVPP 300 PNPEWNGYQD QTICSHYSRY GICKFGPACK FDHSKQEAPS TMAMAGLDQP PPFSHSAATE 360 QTGIAGGTDT AVQQTV*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

SQSEETPVPH AMPTDSTSHL GLQSPDPGST SSPDLSPYDL NHSAVETEHE ESSLQQQLQN  60
LDLKEEEVKT DRKDDGERES NNDADGNAAE DEDDENEEER NDNEIDGENV KKSEGKRSHY  120
PVRPDAESCA YYMKTGLCKF GYNCKFNHPI RRTTQAVKEK VKEEVESTEK PSQTECKYYL  180
RTGGCKFGNA CRFNHSTAKS STSPILEFNF LGLPIRQGEK ECPYYMRNGS CKYGANCRFN  240
HPDPTAAGAC DPTSGYGNGG SVSPQAASQV NMLPWSSPRA LNETAAYIPI MFSPPQVVPP  300
PNPEWNGYQD QTICSHYSRY GICKFGPACK FDHSKQEAPS TMAMAGLDQP PPFSHSAATE  360
QTGIAGGTDT AVQQTV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX590658	0.0	JX590658.1 Gossypium hirsutum clone NBRI_GE25620 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438978.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1
TrEMBL	A0A0D2T9I4	0.0	A0A0D2T9I4_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.008G204400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	5e-69	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G204400.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]