PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G204400.1
Common NameB456_008G204400, LOC105764772
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 457aa    MW: 50218.4 Da    PI: 5.332
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G204400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.2e-10116138426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C ++++tG Ck+G +CkF+H+
  Gorai.008G204400.1 116 ESCAYYMKTGLCKFGYNCKFNHP 138
                         67********************8 PP
2zf-CCCH352.5e-11162185326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         + +C++++rtG Ck+G+ C+F+H+
  Gorai.008G204400.1 162 QTECKYYLRTGGCKFGNACRFNHS 185
                         568********************8 PP
3zf-CCCH39.59.3e-13207231226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C++++r+G CkyG++C+F+H+
  Gorai.008G204400.1 207 GEKECPYYMRNGSCKYGANCRFNHP 231
                         6789********************9 PP
4zf-CCCH26.98.5e-09343369127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f++tG Ck+ ++Ck++H++
  Gorai.008G204400.1 343 PGQPECSYFLKTGDCKFKSNCKYHHPK 369
                         5789*********************96 PP
5zf-CCCH35.12.2e-11390415227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++ +C++++r+G+Ck+G+ CkF H++
  Gorai.008G204400.1 390 DQTICSHYSRYGICKFGPACKFDHSK 415
                         5789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.99112140IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-4112139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6112140IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7116138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4117137IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5159186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878159187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6162187IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9163185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5165185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004205233IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6205232IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6207232IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10207231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5211230IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333342370IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4342369IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-6344369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5346371IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-5388415IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784388416IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6389417IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8391415IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5393417IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MPTDSTSHLG LQSPDPGSTS SPDLSPYDLN HSAVETEHEE SSLQQQLQNL DLKEEEVKTD  60
RKDDGERESN NDADGNAAED EDDENEEERN DNEIDGENVK KSEGKRSHYP VRPDAESCAY  120
YMKTGLCKFG YNCKFNHPIR RTTQAVKEKV KEEVESTEKP SQTECKYYLR TGGCKFGNAC  180
RFNHSTAKSS TSPILEFNFL GLPIRQGEKE CPYYMRNGSC KYGANCRFNH PDPTAAGACD  240
PTSGYGNGGS VSPQAASQVN MLPWSSPRAL NETAAYIPIM FSPPQVVPPP NPEWNGYQTT  300
VYPPPEGSLH PAPAYVMNNP ATETAVYTHN QPQMVADEFP ARPGQPECSY FLKTGDCKFK  360
SNCKYHHPKN RVAKMAPCVL SDKGLPLRPD QTICSHYSRY GICKFGPACK FDHSKQEAPS  420
TMAMAGLDQP PPFSHSAATE QTGIAGGTDT AVQQTV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5906580.0JX590658.1 Gossypium hirsutum clone NBRI_GE25620 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438978.10.0PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1
SwissprotQ9STM41e-141C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0D2U6J20.0A0A0D2U6J2_GOSRA; Uncharacterized protein
STRINGGorai.008G204400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-130C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]