PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G199700.1 | ||||||||
Common Name | B456_008G199700, LOC105764722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 328aa MW: 36256.9 Da PI: 6.1773 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92.6 | 8.2e-29 | 55 | 150 | 3 | 74 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssas 71 g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk ++WLl++ k i++l+ + s+ +++ Gorai.008G199700.1 55 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQERLGVGQPSKVVDWLLEATKDDIDKLPPLqmplgfnnqfhqpflvphepnpSFLDPN 145 79*************************************************************8888888877777777543333221112 PP TCP 72 ec..e 74 ++ + Gorai.008G199700.1 146 SMlmK 150 22221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.3E-26 | 56 | 129 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.038 | 56 | 114 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MISSSREAKQ EGETNDGSGG GNKLSKGPSS SSSSRHWSSA GFRNPRIVRV SRSFGGKDRH 60 SKVCTVRGLR DRRIRLSVPT AIQLYDLQER LGVGQPSKVV DWLLEATKDD IDKLPPLQMP 120 LGFNNQFHQP FLVPHEPNPS FLDPNSMLMK DGEEEDQRMA GDRDKGKWIK MNEDENHGGN 180 NNNNNIEDQR LFPLTNHSPF PGLLNNGMPL NSCYHWEPSG LSLSQFGNHG LMAPQTENFF 240 NGNTTSVPLP CSTTVPSATM ASFFPTYTPY GTNPGSNDSR QMNYLQLLSS NFLSNSMKPF 300 SLNVNAGLTH TQNDDENHGD DQDNTDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438890.1 | 0.0 | PREDICTED: transcription factor TCP17 | ||||
Refseq | XP_012438891.1 | 0.0 | PREDICTED: transcription factor TCP17 | ||||
Swissprot | Q9FME3 | 6e-54 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | A0A0D2U6C9 | 0.0 | A0A0D2U6C9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G199700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 9e-50 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G199700.1 |
Entrez Gene | 105764722 |
Publications ? help Back to Top | |||
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