PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G194400.1 | ||||||||
Common Name | B456_008G194400, LOC105764664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 40651.1 Da PI: 8.0062 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.3 | 1.2e-56 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL kkv + ++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke Gorai.008G194400.1 16 LPPGFRFHPTDEELISHYLYKKVLDVNFSA-KAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATDSGYWKATGKDKE 105 79**************************99.88***************888999************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle Gorai.008G194400.1 106 IYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 ***.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-65 | 12 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.233 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MANIGAIDQE NDQMDLPPGF RFHPTDEELI SHYLYKKVLD VNFSAKAIGE VDLNKSEPWE 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATDSGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKYSVHNL PKTAKNEWVI CRVFQKSSGG KKTHISGLVN 180 MGSFGNELGP SVLPPLMDSS SSFNAKKNPV SESVYVPCFS NPVDVQRIQL DTIDHFPENP 240 LLLPVSSNPT NIFPRFQAPN PFFSAQPVTF PPNLHLPGSV LMQDQSILRD LLENHGSNMK 300 SERETMVSVS QETGLTTDIN NEISSVVSNL EIRKRPFNDQ QHPSASTGPL DFDCFWHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-56 | 9 | 172 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-56 | 9 | 172 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-56 | 9 | 172 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-56 | 9 | 172 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-56 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-56 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-56 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-56 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-56 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-56 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-56 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-56 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-56 | 9 | 172 | 7 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-56 | 9 | 172 | 7 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1097 | 0.0 | seedling |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48745579 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ914142 | 0.0 | JQ914142.1 Gossypium hirsutum NAC domain protein 11 (NAC11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438781.1 | 0.0 | PREDICTED: NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 1e-154 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0D2U615 | 0.0 | A0A0D2U615_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G194400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-156 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G194400.1 |
Entrez Gene | 105764664 |
Publications ? help Back to Top | |||
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